Construct: ORF ccsbBroad304_10688

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018391.1_s304c1, BRDN0000404582
Derived from:
ccsbBroadEn_10688
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATM (472)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10688
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 472 ATM ATM serine/threonine kinase NM_001351835.1 100% 100%
2 human 472 ATM ATM serine/threonine kinase NM_001351836.1 100% 100%
3 human 472 ATM ATM serine/threonine kinase XM_017017792.2 6.2% 6.1% 332_333insTA;335_5325del
4 human 472 ATM ATM serine/threonine kinase XM_017017791.1 5.1% 5% 332_333insTA;335_6474del
5 human 472 ATM ATM serine/threonine kinase XR_002957150.1 5% 1_733del;1065_1066insTA;1068_6577del
6 human 472 ATM ATM serine/threonine kinase XM_011542843.2 3.8% 3.7% 332_333insTA;335_8736del
7 human 472 ATM ATM serine/threonine kinase XM_011542842.3 3.7% 3.6% 332_344del;348_351delCTTC;354_9003del
8 human 472 ATM ATM serine/threonine kinase NM_000051.3 3.6% 3.5% 332_333insTA;335_9168del
9 human 472 ATM ATM serine/threonine kinase NM_001351834.2 3.6% 3.5% 332_333insTA;335_9168del
10 human 472 ATM ATM serine/threonine kinase XM_005271562.5 3.6% 3.5% 332_333insTA;335_9168del
11 human 472 ATM ATM serine/threonine kinase XM_006718843.4 3.6% 3.5% 332_333insTA;335_9168del
12 human 472 ATM ATM serine/threonine kinase XM_011542840.3 3.6% 3.5% 332_333insTA;335_9168del
13 human 472 ATM ATM serine/threonine kinase XM_017017789.2 3.6% 3.5% 332_333insTA;335_9168del
14 human 472 ATM ATM serine/threonine kinase XM_017017790.2 3.6% 3.5% 332_333insTA;335_9168del
15 mouse 11920 Atm ataxia telangiectasia mutated XM_011242386.1 4.4% 4.4% (many diffs)
16 mouse 11920 Atm ataxia telangiectasia mutated XR_870525.1 3.5% (many diffs)
17 mouse 11920 Atm ataxia telangiectasia mutated XM_006509956.3 3.1% 3.1% (many diffs)
18 mouse 11920 Atm ataxia telangiectasia mutated NM_007499.2 3.1% 3.1% (many diffs)
19 mouse 11920 Atm ataxia telangiectasia mutated XM_011242385.2 3.1% 3.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
402
ORF length:
336
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcATGAG TCTAGTACTT AATGATCTGC TTATCTGCTG CCGTCAACTA GAACATGATA
121GAGCTACAGA ACGAAAGAAA GAAGTTGAGA AATTTAAGCG CCTGATTCGA GATCCTGAAA
181CAATTAAACA TCTAGATCGG CATTCAGATT CCAAACAAGG AAAATATTTG AATTGGGATG
241CTGTTTTTAG ATTTTTACAG AAATATATTC AGAAAGAAAC AGAATGTCTG AGAATAGCAA
301AACCAAATGT ATCAGCCTCA ACACAAGCCT CCAGGCAGAA AAAGATGCAG GAAATCAGTA
361GTTTGGTCAA ATACTTCATC AAATGTGCAA ACAGAAGTAA GTGCCCAACT TTCTTGTACa
421aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
481ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)