Construct: ORF ccsbBroad304_10698

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013320.1_s304c1, BRDN0000411342
Derived from:
ccsbBroadEn_10698
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DST (667)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10698
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 667 DST dystonin NM_001723.6 42.7% 41.9% (many diffs)
2 human 667 DST dystonin XM_017011225.2 34.6% 33.1% (many diffs)
3 human 667 DST dystonin NM_015548.5 21.8% 21.5% (many diffs)
4 human 667 DST dystonin XM_017011224.2 20.5% 19.8% (many diffs)
5 human 667 DST dystonin NM_183380.3 20.1% 19.3% (many diffs)
6 human 667 DST dystonin NM_001144770.1 19.9% 19.2% (many diffs)
7 human 667 DST dystonin XM_017011223.1 19.6% 18.9% (many diffs)
8 human 667 DST dystonin XM_017011222.2 19.6% 18.8% (many diffs)
9 human 667 DST dystonin XM_017011221.1 19.5% 18.7% (many diffs)
10 human 667 DST dystonin NM_001144769.3 19.4% 18.7% (many diffs)
11 human 667 DST dystonin XM_011514825.3 19.4% 18.7% (many diffs)
12 human 667 DST dystonin XM_017011220.1 19.4% 18.6% (many diffs)
13 human 667 DST dystonin XM_017011219.1 19.2% 18.5% (many diffs)
14 human 667 DST dystonin XM_005249324.3 15.5% 15.3% (many diffs)
15 human 667 DST dystonin XM_011514826.3 14.8% 14.2% (many diffs)
16 human 667 DST dystonin XM_024446530.1 14.5% 14% (many diffs)
17 human 667 DST dystonin XM_005249323.4 14.5% 14% (many diffs)
18 human 667 DST dystonin XM_017011217.1 14.5% 13.9% (many diffs)
19 human 667 DST dystonin XM_005249322.5 14.4% 13.9% (many diffs)
20 human 667 DST dystonin XM_005249320.4 14.4% 13.9% (many diffs)
21 human 667 DST dystonin XM_005249319.2 14.4% 13.9% (many diffs)
22 human 667 DST dystonin XM_017011216.2 14.4% 13.9% (many diffs)
23 human 667 DST dystonin XM_005249318.2 14.4% 13.8% (many diffs)
24 human 667 DST dystonin XM_017011215.2 14.4% 13.8% (many diffs)
25 human 667 DST dystonin XM_017011214.2 14.3% 13.8% (many diffs)
26 human 667 DST dystonin XM_017011213.1 14.3% 13.8% (many diffs)
27 human 667 DST dystonin XM_005249316.3 14.3% 13.7% (many diffs)
28 human 667 DST dystonin XM_017011212.1 14.2% 13.7% (many diffs)
29 human 667 DST dystonin XM_017011211.2 14.2% 13.7% (many diffs)
30 human 667 DST dystonin XM_005249315.3 14.2% 13.6% (many diffs)
31 human 667 DST dystonin XM_017011210.1 14.2% 13.6% (many diffs)
32 human 667 DST dystonin XM_011514824.2 14.1% 13.6% (many diffs)
33 human 667 DST dystonin XM_017011209.1 14.1% 13.6% (many diffs)
34 human 667 DST dystonin XM_017011208.1 14.1% 13.6% (many diffs)
35 human 667 DST dystonin XM_017011207.1 14.1% 13.6% (many diffs)
36 human 667 DST dystonin XM_005249310.4 14.1% 13.6% (many diffs)
37 human 667 DST dystonin XM_017011206.1 14.1% 13.6% (many diffs)
38 human 667 DST dystonin XM_017011205.1 14.1% 13.6% (many diffs)
39 mouse 13518 Dst dystonin XM_006495686.3 36.7% 39% (many diffs)
40 mouse 13518 Dst dystonin NM_010081.2 36.7% 38.9% (many diffs)
41 mouse 13518 Dst dystonin XM_006495685.2 18.6% 19.9% (many diffs)
42 mouse 13518 Dst dystonin XM_017314868.1 17.7% 18.2% (many diffs)
43 mouse 13518 Dst dystonin NM_133833.3 17.7% 18.2% (many diffs)
44 mouse 13518 Dst dystonin XM_006495684.3 17.3% 17.8% (many diffs)
45 mouse 13518 Dst dystonin XM_017314811.1 17.1% 17.6% (many diffs)
46 mouse 13518 Dst dystonin XM_006495682.2 16.7% 17.3% (many diffs)
47 mouse 13518 Dst dystonin XM_017314794.1 16.6% 17.2% (many diffs)
48 mouse 13518 Dst dystonin XM_006495680.3 13.4% 14.3% (many diffs)
49 mouse 13518 Dst dystonin XM_017314848.1 12.8% 13.3% (many diffs)
50 mouse 13518 Dst dystonin NM_134448.3 12.8% 13.3% (many diffs)
51 mouse 13518 Dst dystonin XM_006495679.3 12.7% 13.2% (many diffs)
52 mouse 13518 Dst dystonin XM_006495688.3 12.7% 13.1% (many diffs)
53 mouse 13518 Dst dystonin XM_006495678.3 12.6% 13% (many diffs)
54 mouse 13518 Dst dystonin XM_017314750.1 12.6% 13% (many diffs)
55 mouse 13518 Dst dystonin XM_017314741.1 12.6% 13% (many diffs)
56 mouse 13518 Dst dystonin XM_006495674.3 12.5% 12.9% (many diffs)
57 mouse 13518 Dst dystonin XM_017314722.1 12.5% 12.9% (many diffs)
58 mouse 13518 Dst dystonin XM_006495691.3 12.5% 12.9% (many diffs)
59 mouse 13518 Dst dystonin XM_017314716.1 12.5% 12.9% (many diffs)
60 mouse 13518 Dst dystonin XM_017314712.1 12.5% 12.9% (many diffs)
61 mouse 13518 Dst dystonin XM_017314706.1 12.5% 12.9% (many diffs)
62 mouse 13518 Dst dystonin XM_006495669.3 12.4% 12.8% (many diffs)
63 mouse 13518 Dst dystonin XM_017314689.1 12.4% 12.8% (many diffs)
64 mouse 13518 Dst dystonin XM_017314687.1 12.4% 12.8% (many diffs)
65 mouse 13518 Dst dystonin XM_006495690.3 12.4% 12.8% (many diffs)
66 mouse 13518 Dst dystonin XM_017314676.1 12.3% 12.8% (many diffs)
67 mouse 13518 Dst dystonin XM_017314665.1 12.3% 12.7% (many diffs)
68 mouse 13518 Dst dystonin XM_017314651.1 12.3% 12.7% (many diffs)
69 mouse 13518 Dst dystonin XM_006495666.3 12.3% 12.7% (many diffs)
70 mouse 13518 Dst dystonin NM_001276764.1 12.3% 12.7% (many diffs)
71 mouse 13518 Dst dystonin XM_017314635.1 12.3% 12.7% (many diffs)
72 mouse 13518 Dst dystonin XM_017314621.1 12.3% 12.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3495
ORF length:
3429
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca cagtagtagt tatagttacc gtagcagtga ttctgtgttt agtaacacta
121ccagcactcg aaccagtctt gattcaaatg aaaatcttct cttggttcat tgtggtccaa
181cactgatcaa ctcttgcatt agcttcggca gtgaatcctt tgatggacac aggttagaaa
241tgttgcaaca gattgccaac agagttcaga gggacagtgt catctgtgaa gacaaactga
301ttcttgctgg aaatgctctt cagtctgatt ctaaaagatt agaatcagga gtgcagtttc
361agaatgaagc agaaattgct gggtatatac ttgaatgtga gaacctttta cgccagcatg
421taattgatgt acagattctt attgatggaa aatactacca ggcagatcaa ttggtacaga
481gggttgcaaa actgcgtgac gaaattatgg ccttaaggaa cgaatgttct tctgtgtaca
541gcaaaggacg catactgaca acagaacaga caaagctcat gatatcagga atcactcaaa
601gtttaaactc aggatttgca cagaccttac accctagtct gacctcaggg ctgacccaga
661gtttaacacc ttccctaacc tcttctagta tgacttctgg cctgtcatca gggatgactt
721cccgcctgac tccatctgtc actccagctt atacacctgg tttcccatca ggattagttc
781caaatttcag ttcaggagta gagccaaatt cattgcaaac tttgaagttg atgcagatcc
841gaaaacccct tctaaagtct tctttgctgg atcaaaattt aacagaagaa gaaatcaata
901tgaaatttgt tcaggatctt ttgaattggg ttgatgagat gcaggtacaa ctggaccgca
961ctgagtgggg ctcagatttg ccaagtgttg aaagccattt agaaaatcat aaaaatgttc
1021atagagctat tgaagaattt gaatctagtc tcaaagaagc taaaatcagt gagattcaaa
1081tgacagcacc tcttaaactg acttatgcag aaaagttgca cagattagag agtcagtatg
1141caaaactctt gaatacatcc aggaatcaag aacggcacct tgatacactc cataattttg
1201taagtcgtgc gactaatgaa cttatttggt tgaatgaaaa agaagaggag gaagttgctt
1261atgactggag tgagagaaac accaacatag ctaggaaaaa agattatcat gctgaattaa
1321tgagagaact tgatcaaaag gaagaaaata ttaaatcagt tcaggagata gcagagcagc
1381tacttctaga aaatcatcca gcccggttaa ctattgaggc ctacagagcg gcaatgcaga
1441cgcagtggag ctggatctta cagctctgcc agtgtgtgga gcagcacata aaggagaaca
1501cagcgtattt cgagtttttc aatgatgcca aagaagctac tgattactta aggaatctaa
1561aagatgccat tcagcggaag tacagctgtg atagatcaag cagcattcac aagctagaag
1621accttgttca ggaatcaatg gaagagaaag aagaacttct gcagtacaaa agcactatag
1681caaacctaat gggaaaagca aaaacaataa ttcaactgaa gccaaggaat tctgactgtc
1741cactcaaaac ttctattccg atcaaagcta tctgtgacta cagacaaatt gagataacca
1801tttacaaaga cgatgaatgt gttttggcga ataactctca tcgtgctaaa tggaaggtca
1861ttagtcctac tgggaatgag gctatggtcc catctgtgtg cttcaccgtt cctccaccaa
1921acaaagaagc ggtggacctt gccaacagaa ttgagcaaca gtatcagaat gtcctgactc
1981tttggcatga gtctcacata aacatgaaga gtgtagtatc ctggcattat ctcatcaatg
2041aaattgatag aattcgagct agcaatgtgg cttcaataaa gacaatgcta cctggtgaac
2101atcagcaagt tctaagtaat ctacaatctc gttttgaaga ttttctggaa gatagccagg
2161aatcccaagt cttttcaggc tcagatataa cacaactgga aaaggaggtt aatgtatgta
2221agcagtatta tcaagaactt cttaaatctg cagaaagaga ggagcaagag gaatcagttt
2281ataatctcta catctctgaa gttcgaaaca ttagacttcg gttagagaac tgtgaagatc
2341ggctgattag acagattcga actcccctgg aaagagatga tttgcatgaa agtgtgttca
2401gaatcacaga acaggagaaa ctaaagaaag agctggaacg acttaaagat gatttgggaa
2461caatcacaaa taagtgtgag gagtttttca gtcaagcagc agcctcttca tcagtcccta
2521ccctacgatc agagcttaat gtggtccttc agaacatgaa ccaagtctat tctatgtctt
2581ccacttacat agataagttg aaaactgtta acttggtgtt aaaaaacact caagctgcag
2641aagccctcgt aaaactctat gaaactaaac tgtgtgaaga agaagcagtt atagctgaca
2701agaataatat tgagaatcta ataagtactt taaagcaatg gagatctgaa gtagatgaaa
2761agagacaggt attccatgcc ttagaggatg agttgcagaa agctaaagcc atcagtgatg
2821aaatgtttaa aacgtataaa gaacgggacc ttgattttga ctggcacaaa gaaaaagcag
2881atcaattagt tgaaaggtgg caaaatgttc atgtgcagat tgacaacagg ttacgggact
2941tagagggcat tggcaaatca ctgaagtact acagagacac ttaccatcct ttagatgatt
3001ggatccagca ggttgaaact actcagagaa agattcagga aaatcagcct gaaaatagta
3061aaaccctagc cacacagttg aatcaacaga agatgctggt gtccgaaata gaaatgaaac
3121agagcaaaat ggacgagtgt caaaaatatg cagaacagta ctcagctaca gtgaaggact
3181atgaattaca aacaatgacc taccgggcca tggtagattc acaacaaaaa tctccagtga
3241aacgccgaag aatgcagagt tcagcagatc tcattattca agagttcatg gacctaagga
3301ctcgatatac tgccctggtc actctcatga cacaatatat taaatttgct ggtgattcat
3361tgaagaggct ggaagaggag gaggtaatca ttaacagtga gcaccctgta aatataaagg
3421agctagagat gagcagtaac tacagtgtag tttgggaaag caaaacatgt ttcatgataa
3481atttatgtgg ccggtaccca actttcttgt acaaagtggt tggtaagcct atccctaacc
3541ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
3601cgacaatcaa cctctggatt a

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