Transcript: Mouse NM_001276764.1

Mus musculus dystonin (Dst), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-04-23
Taxon:
Mus musculus (mouse)
Gene:
Dst (13518)
Length:
24271
CDS:
48..23201

Additional Resources:

NCBI RefSeq record:
NM_001276764.1
NBCI Gene record:
Dst (13518)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001276764.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000377035 ACTCTTATGACGCAGTATATT pLKO_005 4812 CDS 100% 15.000 21.000 N Dst n/a
2 TRCN0000377036 GCGATGCTCTAACTGTAAATT pLKO_005 23635 3UTR 100% 15.000 21.000 N Dst n/a
3 TRCN0000366702 GGTCGTCAAAGCAGCATAAAT pLKO_005 12999 CDS 100% 15.000 21.000 N Dst n/a
4 TRCN0000088313 CGGATATAAGTCAACTAGAAA pLKO.1 3673 CDS 100% 5.625 7.875 N Dst n/a
5 TRCN0000088315 GCCACTGATTACCTAAGGAAT pLKO.1 3030 CDS 100% 4.950 6.930 N Dst n/a
6 TRCN0000376794 TAGTAATGTGGCTTCGATAAA pLKO_005 3551 CDS 100% 13.200 10.560 N Dst n/a
7 TRCN0000088314 CCCTTGTCAAACTCTACGAAA pLKO.1 4135 CDS 100% 4.950 3.960 N Dst n/a
8 TRCN0000088316 GCCCTTGTCAAACTCTACGAA pLKO.1 4134 CDS 100% 3.000 2.400 N Dst n/a
9 TRCN0000366629 TATTCTCAGGCTCGGATATAA pLKO_005 3661 CDS 100% 15.000 10.500 N Dst n/a
10 TRCN0000377037 AGTTGAACAGATCGGTGATAA pLKO_005 22262 CDS 100% 13.200 9.240 N Dst n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001276764.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10698 pDONR223 100% 12.3% 12.7% None (many diffs) n/a
2 ccsbBroad304_10698 pLX_304 0% 12.3% 12.7% V5 (many diffs) n/a
3 TRCN0000467550 GTATCGAGCTCTGCGTGTCACTGC pLX_317 9.9% 12.3% 12.7% V5 (many diffs) n/a
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