Construct: ORF ccsbBroad304_10725

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014108.1_s304c1, BRDN0000461660
Derived from:
ccsbBroadEn_10725
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH7 (1005)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10725
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1005 CDH7 cadherin 7 NM_001317214.3 99.8% 99.6% 391A>G;687C>T;1727A>G
2 human 1005 CDH7 cadherin 7 NM_001362438.2 78.8% 78.2% (many diffs)
3 human 1005 CDH7 cadherin 7 NM_004361.5 78.8% 78.2% (many diffs)
4 human 1005 CDH7 cadherin 7 NM_033646.3 78.8% 78.2% (many diffs)
5 mouse 241201 Cdh7 cadherin 7, type 2 XM_017320706.1 86.1% 94.4% (many diffs)
6 mouse 241201 Cdh7 cadherin 7, type 2 NM_001316743.1 70.5% 77% (many diffs)
7 mouse 241201 Cdh7 cadherin 7, type 2 NM_172853.3 70.5% 77% (many diffs)
8 mouse 241201 Cdh7 cadherin 7, type 2 XM_006529600.3 70.5% 77% (many diffs)
9 mouse 241201 Cdh7 cadherin 7, type 2 XM_006529601.3 70.5% 77% (many diffs)
10 mouse 241201 Cdh7 cadherin 7, type 2 XM_006529608.3 70.5% 77% (many diffs)
11 mouse 241201 Cdh7 cadherin 7, type 2 XM_006529609.3 70.5% 77% (many diffs)
12 mouse 241201 Cdh7 cadherin 7, type 2 XM_006529610.3 70.5% 77% (many diffs)
13 mouse 241201 Cdh7 cadherin 7, type 2 XM_006529611.3 70.5% 77% (many diffs)
14 mouse 241201 Cdh7 cadherin 7, type 2 XM_011248006.2 70.5% 77% (many diffs)
15 mouse 241201 Cdh7 cadherin 7, type 2 XM_017320693.1 70.5% 77% (many diffs)
16 mouse 241201 Cdh7 cadherin 7, type 2 XM_017320698.1 70.5% 77% (many diffs)
17 mouse 241201 Cdh7 cadherin 7, type 2 XM_017320699.1 70.5% 77% (many diffs)
18 mouse 241201 Cdh7 cadherin 7, type 2 XM_017320701.1 70.5% 77% (many diffs)
19 mouse 241201 Cdh7 cadherin 7, type 2 XM_017320703.1 70.5% 77% (many diffs)
20 mouse 241201 Cdh7 cadherin 7, type 2 NM_001316744.1 63.3% 67.9% (many diffs)
21 mouse 241201 Cdh7 cadherin 7, type 2 XM_011248008.2 27.6% 29.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1956
ORF length:
1890
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa gttgggcaaa gtggagttct gccattttct gcagctaata gctcttttcc
121tgtgtttttc tgggatgagt caagcagaac tctcaaggtc cagatcaaag ccctatttcc
181aatcagggag gtcccggacc aagcgcagct gggtgtggaa tcagttcttt gtgctggagg
241aatacatggg ttcagacccc ctctatgtag gaaagcttca ctctgatgtt gataaaggag
301atggttccat caaatacatc ttgtcaggcg aaggggcaag ttccattttc attattgatg
361agaacactgg ggatattcat gccaccaaga gactggatcg tgaggagcag gcctactaca
421cgctccgagc tcaagcgctg gataggctca ccaacgaacc cgtggagccc gagtcggagt
481ttgtcatcaa aattcaggat atcaacgaca atgaacccaa atttttggat ggcccataca
541cggcaggagt tcccgaaatg tctcccgtgg ggacctcagt ggtacaagtg acagcgacgg
601atgctgatga tcctacatat ggcaacagtg ccagagtggt ctacagtatt ctgcaaggac
661agccgtactt ctcagtggag ccaaagacag gagtcatcaa gactgccctt ccaaacatgg
721atagagaggc taaagaccag tatttgcttg ttattcaggc aaaggatatg gttggtcaaa
781atggaggact gtcaggaact acatcagtca ctgtgaccct aactgatgtc aacgataatc
841cacctcgctt tcctcgaagg tcttatcaat ataacgtccc agagtcatta cctgtagcct
901cagttgtggc cagaattaaa gctgctgatg cagatattgg agctaatgct gaaatggagt
961acaagattgt ggatggtgat ggtttgggca tttttaagat ttctgttgac aaagaaaccc
1021aggaaggaat cattactata cagaaggagc tggattttga agccaaaaca agttacacgc
1081tacggataga agctgcaaat aaagatgccg accctcgctt tctgagcttg ggtccgttca
1141gtgacacgac aactgtgaag ataattgtgg aagatgtaga tgagccccct gtgttctctt
1201cacccttgta ccctatggag gtgtcggaag ctacccaggt tgggaatatc attggcactg
1261tagcagctca tgacccagat tcttccaata gccctgtgag gtactcaatt gacagaaaca
1321cagacttgga gagatacttc aatattgatg ccaacagtgg ggtcatcaca actgccaagt
1381ctttggatcg agagacaaat gctattcaca atatcacagt ccttgcaatg gagagccaga
1441atccatctca agtaggaaga ggctatgtgg ccatcactat acttgacatc aatgataacg
1501cccctgaatt tgccatggac tatgagacca ccgtctgtga aaatgcccag ccggggcagg
1561ttatccagaa aatcagtgct gtggataaag atgagccatc caatggacac cagttttact
1621tcagcttaac aacggatgca acaaataacc acaacttttc attgaaagat aacaaagaca
1681acacagcctc aatactgacc aggagaaacg gcttccggag acaggaacaa tcagtttact
1741atctgccaat tttcattgtg gacagtggat ctccctcact tagcagcacc agcaccctca
1801ccatccgcgt gtgtgactgt gatgctgacg gcgtagccca gacctgcaat gcagaggcct
1861atgtcctacc tgctggcctc agtacaggag ccctgatagc catactcgcc tgtgtcttga
1921cattattggg taggtactgt ttccagggct tgctctgccc aactttcttg tacaaagtgg
1981ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
2041ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

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