Construct: ORF ccsbBroad304_10759
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018148.1_s304c1, BRDN0000402430
- Derived from:
- ccsbBroadEn_10759
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTNNA1 (1495)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10759
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001290312.1 | 99.8% | 100% | 951G>A;1110G>A |
| 2 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323987.1 | 99.8% | 100% | 951G>A;1110G>A |
| 3 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323988.1 | 99.8% | 100% | 951G>A;1110G>A |
| 4 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323989.1 | 99.8% | 100% | 951G>A;1110G>A |
| 5 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323990.1 | 99.8% | 100% | 951G>A;1110G>A |
| 6 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323991.1 | 99.8% | 100% | 951G>A;1110G>A |
| 7 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323992.1 | 99.8% | 100% | 951G>A;1110G>A |
| 8 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323993.1 | 99.8% | 100% | 951G>A;1110G>A |
| 9 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323994.1 | 99.8% | 100% | 951G>A;1110G>A |
| 10 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323995.1 | 99.8% | 100% | 951G>A;1110G>A |
| 11 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323996.1 | 99.8% | 100% | 951G>A;1110G>A |
| 12 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323997.1 | 99.8% | 100% | 951G>A;1110G>A |
| 13 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323998.1 | 99.8% | 100% | 951G>A;1110G>A |
| 14 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323999.1 | 99.8% | 100% | 951G>A;1110G>A |
| 15 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324000.1 | 99.8% | 100% | 951G>A;1110G>A |
| 16 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324011.1 | 94% | 94.2% | 184_185ins93;858G>A;1017G>A |
| 17 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324001.1 | 91.4% | 91.6% | 951G>A;1110G>A;1188_1189ins135 |
| 18 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324002.1 | 84.7% | 83.3% | (many diffs) |
| 19 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324003.1 | 84.7% | 83.3% | (many diffs) |
| 20 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324004.1 | 84.7% | 83.3% | (many diffs) |
| 21 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324005.1 | 84.7% | 83.3% | (many diffs) |
| 22 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324012.1 | 84.7% | 84.8% | 0_1ins243;708G>A;867G>A |
| 23 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324013.1 | 84.7% | 84.8% | 0_1ins243;708G>A;867G>A |
| 24 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324006.1 | 78.7% | 78.9% | 0_1ins339;612G>A;771G>A |
| 25 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324007.1 | 78.7% | 78.9% | 0_1ins339;612G>A;771G>A |
| 26 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324008.1 | 78.7% | 78.9% | 0_1ins339;612G>A;771G>A |
| 27 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324009.1 | 78.7% | 78.9% | 0_1ins339;612G>A;771G>A |
| 28 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001324010.1 | 78.7% | 78.9% | 0_1ins339;612G>A;771G>A |
| 29 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001290310.3 | 68.3% | 68.4% | 1_741del;1692G>A;1851G>A |
| 30 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001290309.3 | 66.6% | 66.7% | 1_801del;1752G>A;1911G>A |
| 31 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323982.2 | 59% | 59.1% | 1_1110del;2061G>A;2220G>A |
| 32 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323983.1 | 59% | 59.1% | 1_1110del;2061G>A;2220G>A |
| 33 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323984.2 | 59% | 59.1% | 1_1110del;2061G>A;2220G>A |
| 34 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001903.5 | 59% | 59.1% | 1_1110del;2061G>A;2220G>A |
| 35 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323985.2 | 58% | 58.1% | (many diffs) |
| 36 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001323986.2 | 55.6% | 55.7% | (many diffs) |
| 37 | human | 1495 | CTNNA1 | catenin alpha 1 | NM_001290307.2 | 50.4% | 49.3% | (many diffs) |
| 38 | mouse | 12385 | Ctnna1 | catenin (cadherin associate... | XM_006525548.3 | 91.6% | 100% | (many diffs) |
| 39 | mouse | 12385 | Ctnna1 | catenin (cadherin associate... | NM_009818.1 | 54.1% | 59.1% | (many diffs) |
| 40 | mouse | 12385 | Ctnna1 | catenin (cadherin associate... | XM_011246818.2 | 54.1% | 59.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1674
- ORF length:
- 1608
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgac caagaagacc agggacttgc gtagacagct ccgcaaagct gtcatggacc 121 acgtttcaga ttctttcctg gaaaccaatg ttccactttt ggtattgatt gaagctgcaa 181 agaatggaaa tgagaaagaa gttaaggagt atgcccaagt tttccgtgaa catgccaaca 241 aattgattga ggttgccaac ttggcctgtt ccatctcaaa taatgaagaa ggtgtaaagc 301 ttgttcgaat gtctgcaagc cagttagaag ccctctgtcc tcaggttatt aatgctgcac 361 tggctttagc agcaaaacca cagagtaaac tggcccaaga gaacatggat ctttttaaag 421 aacaatggga aaaacaagtc cgtgttctca cagatgctgt cgatgacatt acttccattg 481 atgacttctt ggctgtctca gagaatcaca ttttggaaga tgtgaacaaa tgtgtcattg 541 ctctccaaga gaaggatgtg gatggcctgg accgcacagc tggtgcaatt cgaggccggg 601 cagcccgggt cattcacgta gtcacctcag agatggacaa ctatgagcca ggagtctaca 661 cagagaaggt tctggaagcc actaagctgc tctccaacac agtcatgcca cgttttactg 721 agcaagtaga agcagccgtg gaagccctca gctcggaccc tgcccagccc atggatgaga 781 atgagtttat cgatgcttcc cgcctggtat atgatggcat ccgggacatc aggaaagcag 841 tgctgatgat aaggacccct gaggagttgg atgactctga ctttgagaca gaagattttg 901 atgtcagaag caggacgagc gtccagacag aagacgatca gctgatagct ggccagagtg 961 cccgggcgat catggctcag cttccccagg agcaaaaagc gaagattgcg gaacaagtgg 1021 ccagcttcca ggaagaaaag agcaagctgg atgctgaagt gtccaaatgg gacgacagtg 1081 gcaatgacat cattgtgctg gccaagcaga tgtgcatgat tatgatggag atgacagact 1141 ttacccgagg taaaggacca ctcaaaaata catcagatgt catcagtgct gccaagaaaa 1201 ttgctgaggc aggatccagg atggacaagc ttggccgcac cattgcagac cattgccccg 1261 actcggcttg caagcaggac ctgctggcct acctgcaacg catcgccctc tactgccacc 1321 agctgaacat ctgcagcaag gtcaaggccg aggtgcagaa tctcggcggg gagcttgttg 1381 tctctggggt ggacagcgcc atgtccctga tccaggcagc caagaacttg atgaatgctg 1441 tggtgcagac agtgaaggca tcctacgtcg cctctaccaa ataccaaaag tcacagggta 1501 tggcttccct caaccttcct gctgtgtcat ggaagatgaa ggcaccagag aaaaagccat 1561 tggtgaagag agagaaacag gatgagacac agaccaagat taaacgggca tctcagaaga 1621 agcacgtgaa cccggtgcag gccctcagcg agttcaaagc tatggacagc atctacccaa 1681 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 1741 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta