Construct: ORF ccsbBroad304_10970

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002637.1_s304c1, BRDN0000401908
Derived from:
ccsbBroadEn_10970
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAP3K9 (4293)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10970
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4293 MAP3K9 mitogen-activated protein k... NM_001284230.1 99.9% 100% 18G>A
2 human 4293 MAP3K9 mitogen-activated protein k... NM_033141.4 98.7% 98.7% 18G>A;2026_2067del
3 human 4293 MAP3K9 mitogen-activated protein k... XM_005267683.5 97.8% 97.9% 18G>A;1842_1843ins69
4 human 4293 MAP3K9 mitogen-activated protein k... XM_011536788.3 94.6% 94.6% 18G>A;1690_1833del;2170_2211del
5 human 4293 MAP3K9 mitogen-activated protein k... NM_001284231.1 69.8% 69.2% (many diffs)
6 human 4293 MAP3K9 mitogen-activated protein k... XM_011536792.1 68.4% 68.4% 0_1ins918;772_915del;1252_1293del
7 human 4293 MAP3K9 mitogen-activated protein k... NM_001284232.1 66.4% 66.4% (many diffs)
8 human 4293 MAP3K9 mitogen-activated protein k... XM_011536794.2 63.6% 63.6% 0_1ins1086;604_747del;1084_1125del
9 mouse 338372 Map3k9 mitogen-activated protein k... XM_006516036.3 89.5% 94.7% (many diffs)
10 mouse 338372 Map3k9 mitogen-activated protein k... NM_001174107.1 87.6% 92.6% (many diffs)
11 mouse 338372 Map3k9 mitogen-activated protein k... XM_017315122.1 87.5% 91.1% (many diffs)
12 mouse 338372 Map3k9 mitogen-activated protein k... XM_006516037.3 67.9% 67.9% (many diffs)
13 mouse 338372 Map3k9 mitogen-activated protein k... NM_177395.5 50.1% 53.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3381
ORF length:
3312
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggagccctcc agagcacttc tcggctgcct agcgagcgcc gccgctgccg
121ccccgccggg ggaggatgga gcaggggccg gggccgagga ggaggaggag gaggaggagg
181aggcggcggc ggcggtgggc cccggggagc tgggctgcga cgcgccgctg ccctactgga
241cggccgtgtt cgagtacgag gcggcgggcg aggacgagct gaccctgcgg ctgggcgacg
301tggtggaggt gctgtccaag gactcgcagg tgtccggcga cgagggctgg tggaccgggc
361agctgaacca gcgggtgggc atcttcccca gcaactacgt gaccccgcgc agcgccttct
421ccagccgctg ccagcccggc ggcgaggacc ccagttgcta cccgcccatt cagttgttag
481aaattgattt tgcggagctc accttggaag agattattgg catcgggggc tttgggaagg
541tctatcgtgc tttctggata ggggatgagg ttgctgtgaa agcagctcgc cacgaccctg
601atgaggacat cagccagacc atagagaatg ttcgccaaga ggccaagctc ttcgccatgc
661tgaagcaccc caacatcatt gccctaagag gggtatgtct gaaggagccc aacctctgct
721tggtcatgga gtttgctcgt ggaggacctt tgaatagagt gttatctggg aaaaggattc
781ccccagacat cctggtgaat tgggctgtgc agattgccag agggatgaac tacttacatg
841atgaggcaat tgttcccatc atccaccgcg accttaagtc cagcaacata ttgatcctcc
901agaaggtgga gaatggagac ctgagcaaca agattctgaa gatcactgat tttggcctgg
961ctcgggaatg gcaccgaacc accaagatga gtgcggcagg gacgtatgct tggatggcac
1021ccgaagtcat ccgggcctcc atgttttcca aaggcagtga tgtgtggagc tatggggtgc
1081tactttggga gttgctgact ggtgaggtgc cctttcgagg cattgatggc ttagcagtcg
1141cttatggagt ggccatgaac aaactcgccc ttcctattcc ttctacgtgc ccagaacctt
1201ttgccaaact catggaagac tgctggaatc ctgatcccca ctcacgacca tctttcacga
1261atatcctgga ccagctaacc accatagagg agtctggttt ctttgaaatg cccaaggact
1321ccttccactg cctgcaggac aactggaaac acgagattca ggagatgttt gaccaactca
1381gggccaaaga aaaggaactt cgcacctggg aggaggagct gacgcgggct gcactgcagc
1441agaagaacca ggaggaactg ctgcggcgtc gggagcagga gctggccgag cgggagattg
1501acatcctgga acgggagctc aacatcatca tccaccagct gtgccaggag aagccccggg
1561tgaagaaacg caagggcaag ttcaggaaga gccggctgaa gctcaaggat ggcaaccgca
1621tcagcctccc ttctgatttc cagcacaagt tcacggtgca ggcctcccct accatggata
1681aaaggaagag tcttatcaac agccgctcca gtcctcctgc aagccccacc atcattcctc
1741gccttcgagc catccagttg acaccaggtg aaagcagcaa aacctggggc aggagctcag
1801tcgtcccaaa ggaggaaggg gaggaggagg agaagagggc cccaaagaag aagggacgga
1861cgtgggggcc agggacgctt ggtcagaagg agcttgcctc gggagatgaa ggatcccctc
1921agagacgtga gaaagctaat ggtttaagta ccccatcaga atctccacat ttccacttgg
1981gcctcaagtc cctggtagat ggatataagc agtggtcgtc cagtgccccc aacctggtga
2041agggcccaag gagtagcccg gccctgccag ggttcaccag ccttatggag atggaggatg
2101aggacagtga aggcccaggg agtggagaga gtcgcctaca gcattcaccc agccagtcct
2161acctctgtat cccattccct cgtggagagg atggcgatgg cccctccagt gatggaatcc
2221atgaggagcc caccccagtc aactcggcca cgagtacccc tcagctgacg ccaaccaaca
2281gcctcaagcg gggcggtgcc caccaccgcc gctgcgaggt ggctctgctc ggctgtgggg
2341ctgttctggc agccacaggc ctagggtttg acttgctgga agctggcaag tgccagctgc
2401ttcccctgga ggagcctgag ccaccagccc gggaggagaa gaaaagacgg gagggtcttt
2461ttcagaggtc cagccgtcct cgtcggagca ccagcccccc atcccgaaag cttttcaaga
2521aggaggagcc catgctgttg ctaggagacc cctctgcctc cctgacgctg ctctccctct
2581cctccatctc cgagtgcaac tccacacgct ccctgctgcg ctccgacagc gatgaaattg
2641tcgtgtatga gatgccagtc agcccagtcg aggcccctcc cctgagtcca tgtacccaca
2701accccctggt caatgtccga gtagagcgct tcaaacgaga tcctaaccaa tctctgactc
2761ccacccatgt caccctcacc accccctcgc agcccagcag tcaccggcgg actccttctg
2821atggggccct taagccagag actctcctag ccagcaggag cccctccagc aatgggttga
2881gccccagtcc tggagcagga atgttgaaaa cccccagtcc cagccgagac ccaggtgaat
2941tcccccgtct ccctgacccc aatgtggtct tccccccaac cccaaggcgc tggaacactc
3001agcaggactc taccttggag agacccaaga ctctggagtt tctgcctcgg ccgcgtcctt
3061ctgccaaccg gcaacggctg gacccttggt ggtttgtgtc ccccagccat gcccgcagca
3121cctccccagc caacagctcc agcacagaga cgcccagcaa cctggactcc tgctttgcta
3181gcagtagcag cactgtagag gagcggcctg gacttccagc cctgctcccg ttccaggcag
3241ggccgctgcc cccgactgag cggacgctcc tggacctgga tgcagagggg cagagtcagg
3301acagcaccgt gccgctgtgc agagcggaac tgaacacaca caggcctgcc ccttatgaga
3361tccagcagga gttctggtct ttgccaactt tcttgtacaa agtggttggt aagcctatcc
3421ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
3481ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.