Construct: ORF ccsbBroad304_10970

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002637.1_s304c1, BRDN0000401908
Derived from:
ccsbBroadEn_10970
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAP3K9 (4293)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10970
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4293 MAP3K9 mitogen-activated protein k... NM_001284230.1 99.9% 100% 18G>A
2 human 4293 MAP3K9 mitogen-activated protein k... NM_033141.4 98.7% 98.7% 18G>A;2026_2067del
3 human 4293 MAP3K9 mitogen-activated protein k... XM_005267683.5 97.8% 97.9% 18G>A;1842_1843ins69
4 human 4293 MAP3K9 mitogen-activated protein k... XM_011536788.3 94.6% 94.6% 18G>A;1690_1833del;2170_2211del
5 human 4293 MAP3K9 mitogen-activated protein k... NM_001284231.1 69.8% 69.2% (many diffs)
6 human 4293 MAP3K9 mitogen-activated protein k... XM_011536792.1 68.4% 68.4% 0_1ins918;772_915del;1252_1293del
7 human 4293 MAP3K9 mitogen-activated protein k... NM_001284232.1 66.4% 66.4% (many diffs)
8 human 4293 MAP3K9 mitogen-activated protein k... XM_011536794.2 63.6% 63.6% 0_1ins1086;604_747del;1084_1125del
9 mouse 338372 Map3k9 mitogen-activated protein k... XM_006516036.3 89.5% 94.7% (many diffs)
10 mouse 338372 Map3k9 mitogen-activated protein k... NM_001174107.1 87.6% 92.6% (many diffs)
11 mouse 338372 Map3k9 mitogen-activated protein k... XM_017315122.1 87.5% 91.1% (many diffs)
12 mouse 338372 Map3k9 mitogen-activated protein k... XM_006516037.3 67.9% 67.9% (many diffs)
13 mouse 338372 Map3k9 mitogen-activated protein k... NM_177395.5 50.1% 53.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3381
ORF length:
3312
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggagccctcc agagcacttc tcggctgcct agcgagcgcc gccgctgccg
121ccccgccggg ggaggatgga gcaggggccg gggccgagga ggaggaggag gaggaggagg
181aggcggcggc ggcggtgggc cccggggagc tgggctgcga cgcgccgctg ccctactgga
241cggccgtgtt cgagtacgag gcggcgggcg aggacgagct gaccctgcgg ctgggcgacg
301tggtggaggt gctgtccaag gactcgcagg tgtccggcga cgagggctgg tggaccgggc
361agctgaacca gcgggtgggc atcttcccca gcaactacgt gaccccgcgc agcgccttct
421ccagccgctg ccagcccggc ggcgaggacc ccagttgcta cccgcccatt cagttgttag
481aaattgattt tgcggagctc accttggaag agattattgg catcgggggc tttgggaagg
541tctatcgtgc tttctggata ggggatgagg ttgctgtgaa agcagctcgc cacgaccctg
601atgaggacat cagccagacc atagagaatg ttcgccaaga ggccaagctc ttcgccatgc
661tgaagcaccc caacatcatt gccctaagag gggtatgtct gaaggagccc aacctctgct
721tggtcatgga gtttgctcgt ggaggacctt tgaatagagt gttatctggg aaaaggattc
781ccccagacat cctggtgaat tgggctgtgc agattgccag agggatgaac tacttacatg
841atgaggcaat tgttcccatc atccaccgcg accttaagtc cagcaacata ttgatcctcc
901agaaggtgga gaatggagac ctgagcaaca agattctgaa gatcactgat tttggcctgg
961ctcgggaatg gcaccgaacc accaagatga gtgcggcagg gacgtatgct tggatggcac
1021ccgaagtcat ccgggcctcc atgttttcca aaggcagtga tgtgtggagc tatggggtgc
1081tactttggga gttgctgact ggtgaggtgc cctttcgagg cattgatggc ttagcagtcg
1141cttatggagt ggccatgaac aaactcgccc ttcctattcc ttctacgtgc ccagaacctt
1201ttgccaaact catggaagac tgctggaatc ctgatcccca ctcacgacca tctttcacga
1261atatcctgga ccagctaacc accatagagg agtctggttt ctttgaaatg cccaaggact
1321ccttccactg cctgcaggac aactggaaac acgagattca ggagatgttt gaccaactca
1381gggccaaaga aaaggaactt cgcacctggg aggaggagct gacgcgggct gcactgcagc
1441agaagaacca ggaggaactg ctgcggcgtc gggagcagga gctggccgag cgggagattg
1501acatcctgga acgggagctc aacatcatca tccaccagct gtgccaggag aagccccggg
1561tgaagaaacg caagggcaag ttcaggaaga gccggctgaa gctcaaggat ggcaaccgca
1621tcagcctccc ttctgatttc cagcacaagt tcacggtgca ggcctcccct accatggata
1681aaaggaagag tcttatcaac agccgctcca gtcctcctgc aagccccacc atcattcctc
1741gccttcgagc catccagttg acaccaggtg aaagcagcaa aacctggggc aggagctcag
1801tcgtcccaaa ggaggaaggg gaggaggagg agaagagggc cccaaagaag aagggacgga
1861cgtgggggcc agggacgctt ggtcagaagg agcttgcctc gggagatgaa ggatcccctc
1921agagacgtga gaaagctaat ggtttaagta ccccatcaga atctccacat ttccacttgg
1981gcctcaagtc cctggtagat ggatataagc agtggtcgtc cagtgccccc aacctggtga
2041agggcccaag gagtagcccg gccctgccag ggttcaccag ccttatggag atggaggatg
2101aggacagtga aggcccaggg agtggagaga gtcgcctaca gcattcaccc agccagtcct
2161acctctgtat cccattccct cgtggagagg atggcgatgg cccctccagt gatggaatcc
2221atgaggagcc caccccagtc aactcggcca cgagtacccc tcagctgacg ccaaccaaca
2281gcctcaagcg gggcggtgcc caccaccgcc gctgcgaggt ggctctgctc ggctgtgggg
2341ctgttctggc agccacaggc ctagggtttg acttgctgga agctggcaag tgccagctgc
2401ttcccctgga ggagcctgag ccaccagccc gggaggagaa gaaaagacgg gagggtcttt
2461ttcagaggtc cagccgtcct cgtcggagca ccagcccccc atcccgaaag cttttcaaga
2521aggaggagcc catgctgttg ctaggagacc cctctgcctc cctgacgctg ctctccctct
2581cctccatctc cgagtgcaac tccacacgct ccctgctgcg ctccgacagc gatgaaattg
2641tcgtgtatga gatgccagtc agcccagtcg aggcccctcc cctgagtcca tgtacccaca
2701accccctggt caatgtccga gtagagcgct tcaaacgaga tcctaaccaa tctctgactc
2761ccacccatgt caccctcacc accccctcgc agcccagcag tcaccggcgg actccttctg
2821atggggccct taagccagag actctcctag ccagcaggag cccctccagc aatgggttga
2881gccccagtcc tggagcagga atgttgaaaa cccccagtcc cagccgagac ccaggtgaat
2941tcccccgtct ccctgacccc aatgtggtct tccccccaac cccaaggcgc tggaacactc
3001agcaggactc taccttggag agacccaaga ctctggagtt tctgcctcgg ccgcgtcctt
3061ctgccaaccg gcaacggctg gacccttggt ggtttgtgtc ccccagccat gcccgcagca
3121cctccccagc caacagctcc agcacagaga cgcccagcaa cctggactcc tgctttgcta
3181gcagtagcag cactgtagag gagcggcctg gacttccagc cctgctcccg ttccaggcag
3241ggccgctgcc cccgactgag cggacgctcc tggacctgga tgcagagggg cagagtcagg
3301acagcaccgt gccgctgtgc agagcggaac tgaacacaca caggcctgcc ccttatgaga
3361tccagcagga gttctggtct ttgccaactt tcttgtacaa agtggttggt aagcctatcc
3421ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
3481ttaagtcgac aatcaacctc tggatta

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