Construct: ORF ccsbBroad304_11010

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006536.1_s304c1, BRDN0000402912
Derived from:
ccsbBroadEn_11010
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ORC4 (5000)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11010
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5000 ORC4 origin recognition complex ... NM_001190879.2 56.8% 56.6% 233A>G;745_1308del
2 human 5000 ORC4 origin recognition complex ... NM_001374270.1 56.8% 56.6% 233A>G;745_1308del
3 human 5000 ORC4 origin recognition complex ... NM_002552.5 56.8% 56.6% 233A>G;745_1308del
4 human 5000 ORC4 origin recognition complex ... NM_181741.4 56.8% 56.6% 233A>G;745_1308del
5 human 5000 ORC4 origin recognition complex ... NM_181742.3 56.8% 56.6% 233A>G;745_1308del
6 human 5000 ORC4 origin recognition complex ... XM_011511255.2 56.8% 56.6% 233A>G;745_1308del
7 human 5000 ORC4 origin recognition complex ... NM_001190882.2 39.8% 39.6% 0_1ins222;11A>G;523_1086del
8 human 5000 ORC4 origin recognition complex ... NM_001190881.2 37.6% 37.6% 0_1ins252;493_1056del
9 human 5000 ORC4 origin recognition complex ... NM_001374272.1 37.6% 37.6% 0_1ins252;493_1056del
10 mouse 26428 Orc4 origin recognition complex,... NM_011958.3 50.5% 50.4% (many diffs)
11 mouse 26428 Orc4 origin recognition complex,... XM_006498063.3 50.5% 50.4% (many diffs)
12 mouse 26428 Orc4 origin recognition complex,... XM_006498064.3 50.5% 50.4% (many diffs)
13 mouse 26428 Orc4 origin recognition complex,... XM_006498065.3 50.5% 50.4% (many diffs)
14 mouse 26428 Orc4 origin recognition complex,... NM_001177313.1 47.5% 45.5% (many diffs)
15 mouse 26428 Orc4 origin recognition complex,... XR_001782772.1 16.8% (many diffs)
16 mouse 26428 Orc4 origin recognition complex,... XR_001782769.1 16.7% (many diffs)
17 mouse 26428 Orc4 origin recognition complex,... XR_374094.2 16.3% (many diffs)
18 mouse 26428 Orc4 origin recognition complex,... XR_001782770.1 16.3% (many diffs)
19 mouse 26428 Orc4 origin recognition complex,... NR_033442.1 16.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
810
ORF length:
744
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag cagtcgtaaa tcaaagagta acagcttaat tcacacagag tgcctttcac
121aggtacaaag aattttacgt gaaagatttt gtcgtcagag tccacatagt aacctatttg
181gagtgcaagt acaatacaaa cacttaagtg agctgctgaa aagaactgct ctccatggag
241agagtaactc tgtccttatt atcggacccc gaggatcagg aaaaactatg ttaataagtc
301atgctttgaa agaactcatg gaaatagaag aagtgagtga aaatgtatta caagttcact
361taaatggact gctgcagatc aatgacaaaa tcgccctaaa ggaaatcaca aggcagttaa
421atctggaaaa tgtagttgga gataaagttt ttggaagctt tgctgaaaac ctttcatttc
481ttctggaagc tttaaaaaaa ggtgaccgaa ctagcagttg cccagtgatc ttcatattag
541atgaatttga tctttttgct catcataaaa accaaacact tctctataat ctttttgaca
601tttctcagtc tgcacagacc ccaatagcag ttattggtct tacatgtaga ttggatattt
661tggaactctt agaaaaaaga gtgaagtcaa gattttctca ccggcagata cacttaatga
721attcatttgg ttttccacag tatgttaaaa tatttaaaga acagttatct ctacctgcag
781agtttccaga caaggttttt gctgagaagt gcccaacttt cttgtacaaa gtggttggta
841agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
901ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)