Transcript: Mouse XR_001782769.1

PREDICTED: Mus musculus origin recognition complex, subunit 4 (Orc4), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Orc4 (26428)
Length:
3930
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001782769.1
NBCI Gene record:
Orc4 (26428)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001782769.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238277 TTGGATTCTAAGGCGAATATT pLKO_005 1013 3UTR 100% 15.000 12.000 N Orc4 n/a
2 TRCN0000238274 CTTACATGTAGATTGGATATT pLKO_005 705 3UTR 100% 13.200 10.560 N Orc4 n/a
3 TRCN0000238275 GATCAGGAAAGACCACATTAT pLKO_005 343 3UTR 100% 13.200 9.240 N Orc4 n/a
4 TRCN0000238276 TATCAAGGTCATACAAGTATA pLKO_005 2607 3UTR 100% 13.200 9.240 N Orc4 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001782769.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01125 pDONR223 100% 27.8% None (many diffs) n/a
2 ccsbBroad304_01125 pLX_304 0% 27.8% V5 (many diffs) n/a
3 TRCN0000480371 CCGGTCCTATGTCCGGGTCCGCGT pLX_317 26.2% 27.8% V5 (many diffs) n/a
4 ccsbBroadEn_11010 pDONR223 100% 16.7% None (many diffs) n/a
5 ccsbBroad304_11010 pLX_304 0% 16.7% V5 (many diffs) n/a
Download CSV