Construct: ORF ccsbBroad304_11231
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009636.1_s304c1, BRDN0000401482
- Derived from:
- ccsbBroadEn_11231
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF33A (7581)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11231
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_006954.2 | 99.8% | 99.7% | 4_7delAACAinsTTTC |
| 2 | human | 7581 | ZNF33A | zinc finger protein 33A | XM_011519650.2 | 99.8% | 99.7% | 4_7delAACAinsTTTC |
| 3 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_006974.3 | 99.7% | 99.6% | 4_7delAACAinsTTTC;248_249insAGA |
| 4 | human | 7581 | ZNF33A | zinc finger protein 33A | XM_011519651.2 | 99.7% | 99.6% | 4_7delAACAinsTTTC;248_249insAGA |
| 5 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001324178.2 | 98.9% | 98.7% | 1_7delATGGCGA;10_11insTTT;13_29del |
| 6 | human | 7581 | ZNF33A | zinc finger protein 33A | XM_017016617.1 | 98.9% | 98.7% | 1_7delATGGCGA;10_11insTTT;13_29del |
| 7 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278170.2 | 98.7% | 98.6% | (many diffs) |
| 8 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278173.1 | 97.8% | 97.4% | 1_36del;41delC;45_61del |
| 9 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278177.2 | 97.4% | 96.9% | (many diffs) |
| 10 | human | 7582 | ZNF33B | zinc finger protein 33B | NM_006955.3 | 92.1% | 88.4% | (many diffs) |
| 11 | human | 7582 | ZNF33B | zinc finger protein 33B | NM_001305033.2 | 91.2% | 87.5% | (many diffs) |
| 12 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278175.2 | 90.2% | 89.8% | (many diffs) |
| 13 | human | 7581 | ZNF33A | zinc finger protein 33A | XM_011519653.2 | 90.2% | 89.8% | (many diffs) |
| 14 | human | 7581 | ZNF33A | zinc finger protein 33A | XM_011519654.2 | 90.1% | 89.6% | (many diffs) |
| 15 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278176.2 | 88.4% | 89.8% | 0_1ins209;41_120del |
| 16 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278171.2 | 86.1% | 86.1% | 0_1ins336 |
| 17 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278174.2 | 86.1% | 86.1% | 0_1ins336 |
| 18 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278178.1 | 86.1% | 86.1% | 0_1ins336 |
| 19 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001278179.2 | 86.1% | 86.1% | 0_1ins336 |
| 20 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001324175.2 | 86.1% | 86.1% | 0_1ins336 |
| 21 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001324176.2 | 86.1% | 86.1% | 0_1ins336 |
| 22 | human | 7581 | ZNF33A | zinc finger protein 33A | NM_001324177.2 | 86.1% | 86.1% | 0_1ins336 |
| 23 | human | 7582 | ZNF33B | zinc finger protein 33B | NM_001305035.2 | 78.9% | 75.7% | (many diffs) |
| 24 | human | 7582 | ZNF33B | zinc finger protein 33B | NM_001305036.2 | 78.9% | 75.7% | (many diffs) |
| 25 | human | 7582 | ZNF33B | zinc finger protein 33B | NM_001305037.2 | 78.9% | 75.7% | (many diffs) |
| 26 | human | 7582 | ZNF33B | zinc finger protein 33B | NM_001305038.2 | 78.9% | 75.7% | (many diffs) |
| 27 | human | 7582 | ZNF33B | zinc finger protein 33B | NM_001305039.2 | 78.9% | 75.7% | (many diffs) |
| 28 | human | 7582 | ZNF33B | zinc finger protein 33B | NM_001305040.2 | 78.9% | 75.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2502
- ORF length:
- 2433
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtttcaggta gaacagaagt cccaggagtc agtatcattt aaagatgtga 121 ctgtgggctt cacccaggag gagtggcagc acctggaccc tagtcagagg gctctgtata 181 gagatgtgat gctggagaac tacagcaacc ttgtctcagt ggggtattgt gttcacaaac 241 cagaggtgat cttcaggctg caacaaggag aagagccatg gaaacaggag gaagaattcc 301 caagccaaag ctttccagaa gtctggacag ctgatcacct gaaagagagg agccaagaaa 361 accaatctaa acatttgtgg gaagttgtat tcatcaataa tgaaatgctg actaaggaac 421 aaggtgatgt aataggaata ccatttaatg tggatgtaag ttcttttcct tccagaaaaa 481 tgttctgtca gtgtgattca tgtggaatga gtttcaacac tgtttcagaa ttggttatca 541 gtaagataaa ctatttagga aaaaagtctg atgaatttaa tgcctgtggg aaattgttac 601 tcaatattaa gcatgatgaa actcatactc aagagaaaaa tgaagttttg aaaaatagga 661 acacactgag tcatcatgag gagactttgc agcatgagaa gattcaaact ttagagcaca 721 attttgaata cagtatatgt caggaaaccc tccttgaaaa ggcagtattc aatacacaga 781 agagagagaa cgcagaagag aataactgtg attataatga atttgggaga actttgtgtg 841 atagttcatc cctcttgttc catcagatat ctccgtcaag ggacaatcac tatgaattta 901 gtgattgtga gaagttctta tgtgtgaagt ccaccctttc taaacctcat ggggtatcta 961 tgaaacacta tgattgtggt gaaagtggga ataatttcag gaggaaattg tgtctgtcac 1021 accttcagaa aggtgataaa ggagagaaac actttgaatg taatgaatgt gggaaagctt 1081 tctgggagaa gtcacatctc actcgacatc agagggtgca cacaggacag aaaccctttc 1141 aatgtaatga atgtgaaaaa gctttctggg ataagtcaaa cctcactaaa catcaaagat 1201 cacacacagg ggagaaacct tttgaatgca atgaatgtgg gaaagccttt agccataagt 1261 cagccctcac attacaccag agaacacata caggggagaa accctatcaa tgtaatgcgt 1321 gtgggaaaac tttttgccag aaatctgacc tcactaaaca tcagagaaca cacacagggc 1381 tgaaacccta tgaatgttat gaatgtggaa aatccttccg tgtgacttcg caccttaaag 1441 tacaccagag aactcacaca ggtgagaaac cttttgaatg tcttgagtgt gggaaatcct 1501 ttagtgaaaa gtcaaatctt acacagcatc agagaattca cataggagat aaatcttatg 1561 aatgtaatgc atgtgggaaa actttctacc acaagtcatt actcaccagg catcagataa 1621 ttcatacagg gtggaaacct tatgaatgtt atgaatgtgg gaaaaccttc tgcttgaagt 1681 cagacctcac agtacatcag agaacacaca cagggcagaa accctttgca tgtcccgaat 1741 gtgggaaatt ctttagccat aagtcaaccc tctctcaaca ttatagaaca cacacagggg 1801 agaaacccta cgaatgtcat gaatgtggaa aaatctttta caataaatca tacctaacta 1861 aacataatag aacacataca ggggagaaac cctatgaatg taatgaatgt ggaaaagcct 1921 tctaccagaa gtcacaactc actcagcatc agagaattca cataggggag aaaccctata 1981 aatgtaatga gtgtggaaaa gctttctgcc ataagtcagc tctaattgta catcagagaa 2041 cccatacaca agaaaagccc tataaatgta atgaatgtgg aaaatctttc tgtgtaaaat 2101 caggacttat tttccatgag agaaagcaca cgggggagaa accctatgaa tgcaatgaat 2161 gtgggaaatt cttcaggcac aaatcatcac tcacagtaca tcacagggct cacacaggag 2221 agaaatcttg tcaatgtaat gaatgtggaa aaatctttta ccgtaaatcg gaacttgctc 2281 aacatcagag atcacataca ggggaaaagc cctatgaatg taacacatgc aggaaaactt 2341 tctctcaaaa gtcaaatctc attgtacatc agagaagaca tataggagaa aaccttatga 2401 atgaaatgga tattagaaat ttccagccac aagtcagcct ccataatgcc tcagagtatt 2461 cacactgtgg agaaagccct gatgacatcc tgaatgttca gttgccaact ttcttgtaca 2521 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 2581 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta