Transcript: Human NM_001278171.2

Homo sapiens zinc finger protein 33A (ZNF33A), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-07-07
Taxon:
Homo sapiens (human)
Gene:
ZNF33A (7581)
Length:
6239
CDS:
613..2712

Additional Resources:

NCBI RefSeq record:
NM_001278171.2
NBCI Gene record:
ZNF33A (7581)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001278171.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000014949 CGTGTGACTTCGCACCTTAAA pLKO.1 1627 CDS 100% 13.200 18.480 N ZNF33A n/a
2 TRCN0000014948 CGGGCATAACACCTTACAGAT pLKO.1 2836 3UTR 100% 4.950 6.930 N ZNF33A n/a
3 TRCN0000428569 CGTCAAGGGACAATCACTATG pLKO_005 1082 CDS 100% 10.800 8.640 N ZNF33A n/a
4 TRCN0000424378 ACCATTTAATGTGGATGTAAG pLKO_005 648 CDS 100% 10.800 7.560 N ZNF33A n/a
5 TRCN0000418793 AGTCATCATGAGGAGACTTTG pLKO_005 877 CDS 100% 10.800 7.560 N ZNF33A n/a
6 TRCN0000014950 TCAGTGTGATTCATGTGGAAT pLKO.1 696 CDS 100% 4.950 3.465 N ZNF33A n/a
7 TRCN0000428075 CAAACTTCCTCTAAGGATAAT pLKO_005 3149 3UTR 100% 13.200 7.920 N ZNF33A n/a
8 TRCN0000014951 GCCAGAAATCTGACCTCACTA pLKO.1 1544 CDS 100% 4.950 2.970 N ZNF33A n/a
9 TRCN0000014657 CCCTCTCTCAACATTATAGAA pLKO.1 1976 CDS 100% 5.625 2.813 Y ZNF33B n/a
10 TRCN0000014656 CCCTCACATTACACCAGAGAA pLKO.1 1472 CDS 100% 4.950 2.475 Y ZNF33B n/a
11 TRCN0000014952 CCTCCATAATGCCTCAGAGTA pLKO.1 2646 CDS 100% 4.950 2.475 Y ZNF33A n/a
12 TRCN0000164885 GCTGAGGCAGAAGAATCACTT pLKO.1 4821 3UTR 100% 4.950 2.475 Y FAM74A4 n/a
13 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4657 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001278171.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11231 pDONR223 100% 86.1% 86.1% None 0_1ins336 n/a
2 ccsbBroad304_11231 pLX_304 0% 86.1% 86.1% V5 0_1ins336 n/a
3 TRCN0000478493 CGGCATATTGCGATGCGTGTTATC pLX_317 13.3% 86.1% 86.1% V5 0_1ins336 n/a
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