Construct: ORF ccsbBroad304_11315

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008606.1_s304c1, BRDN0000400940
Derived from:
ccsbBroadEn_11315
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ST3GAL5 (8869)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11315
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354227.2 99.9% 99.7% 227A>G
2 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354229.2 99.9% 99.7% 227A>G
3 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354238.1 99.9% 99.7% 227A>G
4 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001042437.2 98.6% 98.4% 1_15del;242A>G
5 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_003896.4 93.2% 93% 1_84del;311A>G
6 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005202.2 86.3% 86.1% 227A>G;764_765ins159
7 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001363847.1 80.5% 80.3% 1_84del;311A>G;848_849ins159
8 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354223.2 74.3% 74.3% 0_1ins300
9 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354224.2 74.3% 74.3% 0_1ins300
10 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354226.2 74.3% 74.3% 0_1ins300
11 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354233.2 74.3% 74.3% 0_1ins300
12 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354234.1 74.3% 74.3% 0_1ins300
13 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354248.1 74.3% 74.3% 0_1ins300
14 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005203.2 74.3% 74.3% 0_1ins300
15 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005204.2 74.3% 74.3% 0_1ins300
16 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005205.2 74.3% 74.3% 0_1ins300
17 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005206.2 74.3% 74.3% 0_1ins300
18 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005208.2 74.3% 74.3% 0_1ins300
19 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005209.1 74.3% 74.3% 0_1ins300
20 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005212.2 74.3% 74.3% 0_1ins300
21 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005213.2 74.3% 74.3% 0_1ins300
22 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XM_017005214.2 60.7% 60.7% 0_1ins300;464_465ins159
23 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XR_001739019.1 46.4% (many diffs)
24 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... NM_001354247.1 45.3% 45.3% 0_1ins639
25 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XR_001739020.1 38.8% (many diffs)
26 human 8869 ST3GAL5 ST3 beta-galactoside alpha-... XR_001739021.1 34.7% (many diffs)
27 mouse 20454 St3gal5 ST3 beta-galactoside alpha-... NM_011375.3 84.1% 85.1% (many diffs)
28 mouse 20454 St3gal5 ST3 beta-galactoside alpha-... XM_006505817.3 84.1% 85.1% (many diffs)
29 mouse 20454 St3gal5 ST3 beta-galactoside alpha-... NM_001035228.2 78.6% 79.6% (many diffs)
30 mouse 20454 St3gal5 ST3 beta-galactoside alpha-... XM_006505816.3 64.5% 65.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1236
ORF length:
1170
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc aagtgagtac acctatgtga aactgagaag tgattgctcg aggccttccc
121tgcaatggta cacccgagct caaagcaaga tgagaaggcc cagcttgtta ttaaaagaca
181tcctcaaatg tacattgctt gtgtttggag tgtggatcct ttatatcctc aagttaaatt
241atactactga agaatgtgac atgaaaaaaa tgcattatgt ggaccctgac cgtgtaaaga
301gagctcagaa atatgctcag caagtcttgc agaaggaatg tcgtcccaag tttgccaaga
361catcaatggc gctgttattt gagcacaggt atagcgtgga cttactccct tttgtgcaga
421aggcccccaa agacagtgaa gctgagtcca agtacgatcc tccttttggg ttccggaagt
481tctccagtaa agtccagacc ctcttggaac tcttgccaga gcacgacctc cctgaacact
541tgaaagccaa gacctgtcgg cgctgtgtgg ttattggaag cggaggaata ctgcacggat
601tagaactggg ccacaccctg aaccagttcg atgttgtgat aaggttaaac agtgcaccag
661ttgagggata ttcagaacat gttggaaata aaactactat aaggatgact tatccagagg
721gcgcaccact gtctgacctt gaatattatt ccaatgactt atttgttgct gttttattta
781agagtgttga tttcaactgg cttcaagcaa tggtaaaaaa ggaaaccctg ccattctggg
841tacgactctt cttttggaag caggtggcag aaaaaatccc actgcagcca aaacatttca
901ggattttgaa tccagttatc atcaaagaga ctgcctttga catccttcag tactcagagc
961ctcagtcaag gttctggggc cgagataaga acgtccccac aatcggtgtc attgccgttg
1021tcttagccac acatctgtgc gatgaagtca gtttggcggg ttttggatat gacctcaatc
1081aacccagaac acctttgcac tacttcgaca gtcaatgcat ggctgctatg aactttcaga
1141ccatgcataa tgtgacaacg gaaaccaagt tcctcttaaa gctggtcaaa gagggagtgg
1201tgaaagatct cagtggaggc attgatcgtg aattttgccc aactttcttg tacaaagtgg
1261ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1321ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)