Construct: ORF ccsbBroad304_11333
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011657.1_s304c1, BRDN0000409810
- Derived from:
- ccsbBroadEn_11333
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- USP6 (9098)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11333
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_017024010.2 | 66.7% | 59.7% | (many diffs) |
| 2 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721908.2 | 50.1% | 44.8% | (many diffs) |
| 3 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722247.2 | 50.1% | 44.8% | (many diffs) |
| 4 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722253.2 | 50.1% | 44.8% | (many diffs) |
| 5 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524174.1 | 50.1% | 44.8% | (many diffs) |
| 6 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524185.2 | 50% | 44.6% | (many diffs) |
| 7 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525176.2 | 50% | 44.6% | (many diffs) |
| 8 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_011547459.2 | 35% | 31.3% | (many diffs) |
| 9 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722244.2 | 35% | 31.3% | (many diffs) |
| 10 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722250.2 | 35% | 31.3% | (many diffs) |
| 11 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524173.1 | 35% | 31.3% | (many diffs) |
| 12 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_017024646.1 | 35% | 31.3% | (many diffs) |
| 13 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524184.2 | 34.9% | 31.1% | (many diffs) |
| 14 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525175.2 | 34.8% | 31.1% | (many diffs) |
| 15 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721905.2 | 33.2% | 29.7% | (many diffs) |
| 16 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722243.2 | 33.2% | 29.7% | (many diffs) |
| 17 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722249.2 | 33.2% | 29.7% | (many diffs) |
| 18 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524172.1 | 33.2% | 29.7% | (many diffs) |
| 19 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524183.2 | 33.2% | 29.5% | (many diffs) |
| 20 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525174.2 | 33.1% | 29.5% | (many diffs) |
| 21 | human | 414059 | TBC1D3B | TBC1 domain family member 3B | XM_005257980.4 | 32.1% | 28.6% | (many diffs) |
| 22 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_005257981.3 | 32.1% | 28.6% | (many diffs) |
| 23 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369499.1 | 32% | 28.6% | (many diffs) |
| 24 | human | 101060321 | TBC1D3G | TBC1 domain family member 3G | XM_005276914.3 | 32% | 28.6% | (many diffs) |
| 25 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721904.2 | 32% | 28.6% | (many diffs) |
| 26 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722235.2 | 32% | 28.6% | (many diffs) |
| 27 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722236.1 | 32% | 28.6% | (many diffs) |
| 28 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722248.2 | 32% | 28.6% | (many diffs) |
| 29 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_011524175.2 | 32% | 28.6% | (many diffs) |
| 30 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_011524176.2 | 32% | 28.6% | (many diffs) |
| 31 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_011524814.2 | 32% | 28.6% | (many diffs) |
| 32 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722223.3 | 32% | 28.5% | (many diffs) |
| 33 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525172.2 | 31.9% | 28.5% | (many diffs) |
| 34 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525173.2 | 31.9% | 28.5% | (many diffs) |
| 35 | human | 100510707 | TBC1D3J | TBC1 domain family member 3J | XM_024450524.1 | 21% | 16.6% | (many diffs) |
| 36 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524059.2 | 19.2% | 19.1% | 1_6delATGGAC;155_156ins183;496_2358del |
| 37 | human | 100510707 | TBC1D3J | TBC1 domain family member 3J | NM_001355571.1 | 15.3% | 13.8% | (many diffs) |
| 38 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524058.2 | 14.9% | 14.8% | 1_6delATGGAC;155_156ins183;496_3093del |
| 39 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524057.2 | 11.2% | 11.2% | 1_6delATGGAC;155_156ins183;496_4152del |
| 40 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | NM_001304284.2 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 41 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | NM_004505.4 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 42 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524050.1 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 43 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524051.2 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 44 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524052.2 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 45 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524053.2 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 46 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524054.2 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 47 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524055.2 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 48 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524056.2 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
| 49 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_017025290.1 | 11.1% | 11% | 1_6delATGGAC;155_156ins183;496_4218del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 738
- ORF length:
- 672
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggt agagaatgca gatagtttgc aggcacagga gcggaaggac atacttatga 121 agtatgacaa gggacaccga gctgggctgc cagaggacaa ggggcctgag cccgttggaa 181 tcaacagcag cattgatcgt tttggcattt tgcagtcctg cccctcctgg gagtcagagc 241 cacaggaagg cccttgtcct cccttccctg tgccttctcc cgggctgagc cctgagctgg 301 atagggacag agccagtcct ttctgggggt cggctcccag gcttgggcgg ctccaggccc 361 tgtgcacgtc ctcagctctg cctgggttgc cttacagtga gacggagctg cctcctgtga 421 ctgcacggga ggcgaagaaa attcggcggg agatgacacg aacgagcaag tggatggaaa 481 tgctgggaga atgggagaca tataagcaca gtagcaaact catagatcga gtgtacaagg 541 gaattcccat gaacatccgg ggcccggtgt ggtcagtcct cctgaacatt caggaaatca 601 agttgaaaaa ccccggaaga taccagatca tgaaggagag gggcaagagg tcatctgaac 661 acatccacca catcgacctg gacgtgagga cgactctccg gaaccatgtc ttctttaggg 721 atcgatatgg agccaagtac ccaactttct tgtacaaagt ggttggtaag cctatcccta 781 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 841 agtcgacaat caacctctgg atta