Construct: ORF ccsbBroad304_11368

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011642.1_s304c1, BRDN0000461549
Derived from:
ccsbBroadEn_11368
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF6 (9459)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11368
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... NM_001306177.2 86.4% 86.4% 1615_1866del
2 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... XM_011531416.3 82.8% 82.7% 200_280del;1696_1947del
3 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... XM_011531415.3 72.1% 71.9% 1_291del;491_571del;1987_2238del
4 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... NM_004840.3 69.3% 69.3% 1_462del;2077_2328del
5 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... XM_011531413.2 68.9% 68.9% 1_462del;1705_1716del;2089_2340del
6 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... XM_011531414.2 68% 68% (many diffs)
7 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... XM_011531412.3 66.9% 66.8% 1_462del;662_742del;2158_2409del
8 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... XM_017029975.2 66.6% 66.5% (many diffs)
9 human 9459 ARHGEF6 Rac/Cdc42 guanine nucleotid... XM_005262499.3 63% 63% 1_462del;1704_1705ins147;1930_2181del
10 mouse 73341 Arhgef6 Rac/Cdc42 guanine nucleotid... XM_006528316.3 77.5% 80.5% (many diffs)
11 mouse 73341 Arhgef6 Rac/Cdc42 guanine nucleotid... NM_152801.2 60.3% 62.7% (many diffs)
12 mouse 73341 Arhgef6 Rac/Cdc42 guanine nucleotid... XM_006528313.3 59.4% 61.8% (many diffs)
13 mouse 73341 Arhgef6 Rac/Cdc42 guanine nucleotid... XM_006528314.3 55.1% 57.4% (many diffs)
14 mouse 73341 Arhgef6 Rac/Cdc42 guanine nucleotid... XM_006528315.3 54.2% 56.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1680
ORF length:
1614
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac ggaaaatgga agtcatcagt tgatagtaaa agcaagattc aactttaagc
121agactaatga ggatgaactg tcagtttgta agggggacat catttacgtc acacgagttg
181aagaaggagg ctggtgggaa ggcacattaa atgggagaac aggctggttc cccagtaatt
241atgtccgtga aattaaatcc agtgagagac ctctctcccc aaaagccgtc aaaggatttg
301aaactgctcc acttaccaag aattattata ctgtggtgtt acagaacatc ctggacactg
361aaaaagaata tgctaaagaa cttcagtctc ttcttgttac ttacttaaga cccctgcagt
421ccaataacaa tctgagtact gtggaggtta catctttact gggaaacttc gaggaagtat
481gcacatttca acagacactc tgccaagcct tggaagaatg ttcaaagttt ccagaaaacc
541agcacaaagt aggaggttgt ctactgagtc tcatgcctca ttttaaatct atgtatctgg
601cttactgtgc aaaccatcct tcagctgtaa atgtgctcac tcagcacagt gatgagttgg
661aacaattcat ggaaaatcaa ggtgcatcga gcccaggtat cctcatttta acaacaaacc
721tcagcaaacc attcatgcga ctggagaaat atgttactct cttgcaagag ttagaacggc
781atatggagga tactcatcca gatcatcagg atattctgaa agcaatcgta gcattcaaaa
841ctctcatggg gcaatgtcaa gatctgagga agagaaaaca gctggagtta cagatactgt
901ccgaacctat tcaggcatgg gaaggagaag atattaaaaa cttgggaaat gtgattttta
961tgtcacaagt aatggtgcag tatggagcat gtgaggaaaa agaggagcgg taccttatgt
1021tattttcaaa tgtcctgata atgttatctg caagtcctcg gatgagtggc tttatctatc
1081agggaaaaat accaatagca ggaacggtgg tgactagatt agatgaaatt gaagggaatg
1141actgcacatt tgaaatcact ggtaacacag tggagagaat tgtggtccat tgtaacaaca
1201accaggactt ccaggaatgg ttggagcagc tgaacagact gatcagagga cctgcctctt
1261gcagttcatt atccaaaacc tcatcgtcat catgtagtgc tcattcttct tttagctcta
1321ccggacagcc ccgaggaccc ttggagcctc ctcaaattat aaaaccgtgg agtttaagtt
1381gtctacgacc tgcacctcca cttagaccat cagcagcact aggttataaa gagaggatgt
1441cttatatctt aaaggagtct agtaaaagcc ctaaaacgat gaagaaattt cttcataaaa
1501ggaagactga gagaaaacca tcggaggagg aatatgtgat taggaaaagt acagctgctc
1561tggaagagga tgctcaaatc cttaaagtga tcgaagccta ctgcaccagc gcaaattttc
1621aacaaggcca tggctcaagt actcgaaaag attccattcc acaagtccta ctccctgagt
1681acccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
1741attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1801ggatta

Download FASTA (ORF) (Full)

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