Construct: ORF ccsbBroad304_11373
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006770.1_s304c1, BRDN0000404286
- Derived from:
- ccsbBroadEn_11373
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC25A27 (9481)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11373
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9481 | SLC25A27 | solute carrier family 25 me... | NM_001204052.1 | 99.7% | 99.5% | 225T>C;434C>T |
| 2 | human | 9481 | SLC25A27 | solute carrier family 25 me... | NM_001204051.2 | 80.5% | 78.6% | (many diffs) |
| 3 | human | 9481 | SLC25A27 | solute carrier family 25 me... | XM_005249483.2 | 77.9% | 76.1% | (many diffs) |
| 4 | human | 9481 | SLC25A27 | solute carrier family 25 me... | NM_004277.5 | 74.8% | 73% | (many diffs) |
| 5 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_017317682.1 | 69.9% | 73.3% | (many diffs) |
| 6 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | NM_028711.3 | 65.7% | 68.5% | (many diffs) |
| 7 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_011246657.2 | 64.9% | 67.6% | (many diffs) |
| 8 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_006525001.3 | 64.1% | 66.8% | (many diffs) |
| 9 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_017317680.1 | 57.1% | 59.9% | (many diffs) |
| 10 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_017317679.1 | 56.5% | 59.2% | (many diffs) |
| 11 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_017317678.1 | 55.8% | 58.5% | (many diffs) |
| 12 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_006525003.3 | 51.7% | 54.3% | (many diffs) |
| 13 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_017317681.1 | 51.7% | 54.3% | (many diffs) |
| 14 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_017317685.1 | 39.1% | 31.6% | (many diffs) |
| 15 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XM_017317683.1 | 36.8% | 38.3% | (many diffs) |
| 16 | mouse | 74011 | Slc25a27 | solute carrier family 25, m... | XR_001782122.1 | 9.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 801
- ORF length:
- 735
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtc cgtcccggag gaggaggaga ggcttttgcc gctgacccag agatggcccc 121 gagcgagcaa attcctactg tccggctgcg cggctaccgt ggccgagcta gcaacctttc 181 ccctggatct cacaaaaact cgactccaaa tgcaaggaga agcagctctt gctcggttgg 241 gagacggtgc aagagaatct gccccctata ggggaatggt gcgcacagcc ctagggatca 301 ttgaagagga aggctttcta aagctttggc aaggagtgac acccgccatt tacagacacg 361 tagtgtattc tggaggtcga atggtcacat atgaacatct ccgagaggtt gtgtttggca 421 aaagtgaaga tgagcattat cccctttgga aatcagtcat tggagggatg atggctggtg 481 ttattggcca gtttttagtc aatccaactg acctagtgaa ggttcagatg caaatggaag 541 gaaaaaggaa actggaagga aaaccattgc gatttcgtgg tgtacatcat gcatttgcaa 601 aaatcttagc tgaaggagga atacgagggc tttgggcagg ctgggtaccc aatatacaaa 661 gagcagcact ggtgaatatg ggagatttaa ccacttatga tacagtgaaa cactacttgg 721 tattgaatac accacttgag gacaatatca tgactcacgg tttatcaagt gatctggtcg 781 gatctcacaa ggccatccaa tgcccaactt tcttgtacaa agtggttggt aagcctatcc 841 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 901 ttaagtcgac aatcaacctc tggatta