Construct: ORF ccsbBroad304_11439

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016390.1_s304c1, BRDN0000401537
Derived from:
ccsbBroadEn_11439
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NR1H4 (9971)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11439
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9971 NR1H4 nuclear receptor subfamily ... NM_001206977.2 100% 100%
2 human 9971 NR1H4 nuclear receptor subfamily ... NM_001206979.2 100% 100%
3 human 9971 NR1H4 nuclear receptor subfamily ... XM_011539040.2 100% 100%
4 human 9971 NR1H4 nuclear receptor subfamily ... NM_005123.4 99.1% 99.1% 586_587insGTATGTATACAG
5 human 9971 NR1H4 nuclear receptor subfamily ... NM_001206993.2 95.4% 93.6% (many diffs)
6 human 9971 NR1H4 nuclear receptor subfamily ... NM_001206992.2 94.6% 92.7% (many diffs)
7 human 9971 NR1H4 nuclear receptor subfamily ... NM_001206978.2 89.2% 89.2% 443_444ins153
8 human 9971 NR1H4 nuclear receptor subfamily ... XM_011539041.2 85% 83.1% (many diffs)
9 human 9971 NR1H4 nuclear receptor subfamily ... XM_006719719.2 53.6% 47.4% (many diffs)
10 human 9971 NR1H4 nuclear receptor subfamily ... XM_011539042.1 52.8% 46.6% (many diffs)
11 human 9971 NR1H4 nuclear receptor subfamily ... NR_135146.2 51.6% (many diffs)
12 mouse 20186 Nr1h4 nuclear receptor subfamily ... NM_001163504.1 85.2% 92.2% (many diffs)
13 mouse 20186 Nr1h4 nuclear receptor subfamily ... XM_006513391.3 85.2% 92.2% (many diffs)
14 mouse 20186 Nr1h4 nuclear receptor subfamily ... XM_006513393.3 84.4% 91.4% (many diffs)
15 mouse 20186 Nr1h4 nuclear receptor subfamily ... NM_001163700.1 81.8% 87.3% (many diffs)
16 mouse 20186 Nr1h4 nuclear receptor subfamily ... NM_009108.2 81.1% 86.5% (many diffs)
17 mouse 20186 Nr1h4 nuclear receptor subfamily ... XR_001779493.1 77.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1497
ORF length:
1428
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggatcaaaa atgaatctca ttgaacattc ccatttacct accacagatg
121aattttcttt ttctgaaaat ttatttggtg ttttaacaga acaagtggca ggtcctctgg
181gacagaacct ggaagtggaa ccatactcgc aatacagcaa tgttcagttt ccccaagttc
241aaccacagat ttcctcgtca tcctattatt ccaacctggg tttctacccc cagcagcctg
301aagagtggta ctctcctgga atatatgaac tcaggcgtat gccagctgag actctctacc
361agggagaaac tgaggtagca gagatgcctg taacaaagaa gccccgcatg ggcgcgtcag
421cagggaggat caaaggggat gagctgtgtg ttgtttgtgg agacagagcc tctggatacc
481actataatgc actgacctgt gaggggtgta aaggtttctt caggagaagc attaccaaaa
541acgctgtgta caagtgtaaa aacgggggca actgtgtgat ggatatgtac atgcgaagaa
601agtgtcaaga gtgtcgacta aggaaatgca aagagatggg aatgttggct gaatgtatgt
661atacaggctt gttaactgaa attcagtgta aatctaagcg actgagaaaa aatgtgaagc
721agcatgcaga tcagaccgtg aatgaagaca gtgaaggtcg tgacttgcga caagtgacct
781cgacaacaaa gtcatgcagg gagaaaactg aactcacccc agatcaacag actcttctac
841attttattat ggattcatat aacaaacaga ggatgcctca ggaaataaca aataaaattt
901taaaagaaga attcagtgca gaagaaaatt ttctcatttt gacggaaatg gcaaccaatc
961atgtacaggt tcttgtagaa ttcacaaaaa agctaccagg atttcagact ttggaccatg
1021aagaccagat tgctttgctg aaagggtctg cggttgaagc tatgttcctt cgttcagctg
1081agattttcaa taagaaactt ccgtctgggc attctgacct attggaagaa agaattcgaa
1141atagtggtat ctctgatgaa tatataacac ctatgtttag tttttataaa agtattgggg
1201aactgaaaat gactcaagag gagtatgctc tgcttacagc aattgttatc ctgtctccag
1261atagacaata cataaaggat agagaggcag tagagaagct tcaggagcca cttcttgatg
1321tgctacaaaa gttgtgtaag attcaccagc ctgaaaatcc tcaacacttt gcctgtctcc
1381tgggtcgcct gactgaatta cggacattca atcatcacca cgctgagatg ctgatgtcat
1441ggagagtaaa cgaccacaag tttaccccac ttctctgtga aatctgggac gtgcagttgc
1501caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
1561ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1621tta

Download FASTA (ORF) (Full)

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