Construct: ORF ccsbBroad304_11544

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005362.1_s304c1, BRDN0000462305
Derived from:
ccsbBroadEn_11544
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHL1 (10752)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11544
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10752 CHL1 cell adhesion molecule L1 like NM_001253387.1 99.9% 99.8% 859A>G;3100A>G;3165T>C
2 human 10752 CHL1 cell adhesion molecule L1 like XM_011533294.1 99.9% 99.8% 859A>G;3100A>G;3165T>C
3 human 10752 CHL1 cell adhesion molecule L1 like XM_011533295.1 99.9% 99.8% 859A>G;3100A>G;3165T>C
4 human 10752 CHL1 cell adhesion molecule L1 like XM_017005569.1 99.9% 99.8% 859A>G;3100A>G;3165T>C
5 human 10752 CHL1 cell adhesion molecule L1 like XM_017005570.1 99.9% 99.8% 859A>G;3100A>G;3165T>C
6 human 10752 CHL1 cell adhesion molecule L1 like XM_017005571.1 99.9% 99.8% 859A>G;3100A>G;3165T>C
7 human 10752 CHL1 cell adhesion molecule L1 like NM_006614.4 98.6% 98.4% (many diffs)
8 human 10752 CHL1 cell adhesion molecule L1 like XM_006712938.1 98.6% 98.4% (many diffs)
9 human 10752 CHL1 cell adhesion molecule L1 like XM_006712939.3 98.6% 98.4% (many diffs)
10 human 10752 CHL1 cell adhesion molecule L1 like XM_006712940.3 98.6% 98.4% (many diffs)
11 human 10752 CHL1 cell adhesion molecule L1 like XM_011533292.1 98.6% 98.4% (many diffs)
12 human 10752 CHL1 cell adhesion molecule L1 like XM_017005566.1 98.6% 98.4% (many diffs)
13 human 10752 CHL1 cell adhesion molecule L1 like XM_017005567.1 98.6% 98.4% (many diffs)
14 human 10752 CHL1 cell adhesion molecule L1 like XM_017005568.1 98.6% 98.4% (many diffs)
15 human 10752 CHL1 cell adhesion molecule L1 like NM_001253388.1 94.3% 94.1% 680_727del;907A>G;3094_3095ins159
16 human 10752 CHL1 cell adhesion molecule L1 like XM_011533296.1 94.3% 94.1% 680_727del;907A>G;3094_3095ins159
17 human 10752 CHL1 cell adhesion molecule L1 like XM_017005572.1 94.3% 94.1% 680_727del;907A>G;3094_3095ins159
18 human 10752 CHL1 cell adhesion molecule L1 like XM_017005573.1 94.3% 94.1% 680_727del;907A>G;3094_3095ins159
19 mouse 12661 Chl1 cell adhesion molecule L1-like NM_007697.2 84.6% 84.7% (many diffs)
20 mouse 12661 Chl1 cell adhesion molecule L1-like XM_006505472.3 84.6% 84.7% (many diffs)
21 mouse 12661 Chl1 cell adhesion molecule L1-like XM_017321375.1 84.6% 84.7% (many diffs)
22 mouse 12661 Chl1 cell adhesion molecule L1-like XM_017321376.1 84.6% 84.7% (many diffs)
23 mouse 12661 Chl1 cell adhesion molecule L1-like XM_006505467.2 83.5% 83.6% (many diffs)
24 mouse 12661 Chl1 cell adhesion molecule L1-like XM_006505468.3 83.5% 83.6% (many diffs)
25 mouse 12661 Chl1 cell adhesion molecule L1-like XM_006505469.2 83.5% 83.6% (many diffs)
26 mouse 12661 Chl1 cell adhesion molecule L1-like XM_006505470.2 83.5% 83.6% (many diffs)
27 mouse 12661 Chl1 cell adhesion molecule L1-like XM_006505471.3 83.5% 83.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3693
ORF length:
3624
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggagccgctt ttacttggaa gaggactaat cgtatatcta atgttcctcc
121tgttaaaatt ctcaaaagca attgaaatac catcttcagt tcaacaggtt ccaacaatca
181taaaacagtc aaaagtccaa gttgcctttc ccttcgatga gtattttcaa attgaatgtg
241aagctaaagg aaatccagaa ccaacatttt cgtggactaa ggatggcaac cctttttatt
301tcactgacca tcggataatt ccatcgaaca attcaggaac attcaggatc ccaaacgagg
361ggcacatatc tcactttcaa gggaaatacc gctgctttgc ttcaaataaa ctgggaatcg
421ctatgtcaga agaaatagaa tttatagttc caagtgttcc aaaattccca aaagaaaaaa
481ttgaccctct tgaagtggag gagggagatc caattgtcct cccatgcaat cctcccaaag
541gcctcccacc tttacacatt tattggatga atattgaatt agaacacatc gaacaagatg
601aaagagtata catgagccaa aagggagatc tatacttcgc aaacgtggaa gaaaaggaca
661gtcgcaatga ctactgttgc tttgctgcat ttccaagatt aaggactatt gtacagaaaa
721tgccaatgaa actaacagtt aacagttcaa attccatcaa gcaaagaaaa cccaaactgc
781tgttgcctcc cactgagagt ggcagtgagt cttcaattac catcctcaaa ggggaaatct
841tgctgcttga gtgttttgct gaaggcttgc caactccaca ggttgattgg aacaaaattg
901gtggtgactt accaaagggg agagaagcaa aagaaaatta tggcaagact ttgaagatag
961agaatgtctc ctaccaggac aaaggaaatt atcgctgcac agccagcaat ttcttgggaa
1021cagccactca cgattttcac gttatagtag aagagcctcc tcgctggaca aagaagcctc
1081agagtgctgt gtatagcacc ggaagcaatg gcatcttgtt atgtgaggct gaaggagaac
1141ctcaacccac aatcaagtgg agagtcaatg gctccccagt tgacaatcat ccatttgctg
1201gtgatgttgt cttccccagg gaaatcagtt ttaccaacct tcaaccaaat catactgctg
1261tgtaccagtg tgaagcctca aatgtccatg gaactatcct tgccaatgcc aatattgatg
1321ttgtggatgt ccgtccattg atacaaacca aagatggaga aaattacgct acagtggttg
1381ggtacagtgc tttcttacat tgcgagttct ttgcttcacc tgaggcagtc gtgtcctggc
1441agaaggtgga agaagtgaaa cccctggagg gcaggcggta tcatatctat gaaaatggca
1501cattgcagat caacagaacc accgaagaag atgctgggtc ttactcatgt tgggtagaaa
1561atgctatagg aaaaactgca gtcacagcca atttggatat tagaaatgct acaaaactta
1621gagtttctcc taagaatcct cgtatcccca aattgcatat gcttgaatta cattgtgaaa
1681gcaaatgtga ctcacatttg aaacacagtt tgaagttgtc ctggagtaaa gatggagaag
1741cctttgaaat taatggcaca gaagatggca ggataattat tgatggagct aatttgacca
1801tatctaatgt aactttagag gaccaaggta tttactgctg ttcagctcat actgctctag
1861acagtgctgc cgatataact caagtaactg ttcttgatgt tccggatcca ccagaaaacc
1921ttcacttgtc tgaaagacag aacaggagtg ttcggctgac ctgggaagct ggagctgacc
1981acaacagcaa tattagcgag tatattgttg aatttgaagg aaacaaagaa gagcctggaa
2041ggtgggagga actgaccaga gtccaaggaa agaaaaccac agttatctta cctttggctc
2101catttgtgag ataccagttc agggtcatag ccgtgaacga agtagggaga agtcagccta
2161gccagccgtc agaccatcat gaaacaccac cagcagctcc agataggaat ccacaaaaca
2221taagggttca agcctctcaa cccaaggaaa tgattataaa gtgggagcct ttgaaatcca
2281tggagcagaa tggaccaggc ctagagtaca gagtgacctg gaagccacag ggagccccag
2341tggagtggga agaagaaaca gtcacaaacc acacattgcg ggtgatgacg cctgctgtct
2401atgcccctta tgatgtcaag gtccaggcta tcaatcaact aggatctggg cctgaccctc
2461agtcagtgac tctctattct ggagaagact atcctgatac agctccagtg atccatgggg
2521tggacgttat aaacagtaca ttagttaaag ttacctggtc aacagttcca aaggacagag
2581tacatggacg tctgaaaggc tatcagataa attggtggaa aacaaaaagt ctgttggatg
2641gaagaacaca tcccaaagaa gtgaacattc taagattttc aggacaaaga aactctggaa
2701tggttccttc cttagatgcc tttagtgaat ttcatttaac agtcttagcc tataactcta
2761aaggagctgg tcctgaaagt gagccttata tatttcaaac accagaagga gtacctgaac
2821agccaacttt tctaaaggtc atcaaagttg ataaagacac tgccacttta tcttggggac
2881tacctaagaa attaaatgga aacttaactg gctatctttt gcaatatcag ataataaatg
2941acacctacga gattggagaa ttaaatgata ttaacattac aactccatca aagcccagct
3001ggcacctctc aaacctgaat gcaactacca agtacaaatt ctacttgagg gcttgcactt
3061cacagggctg tggaaaaccg atcacggagg aaagctccac cttaggagaa gggagtaaag
3121gtatcgggaa gatatcagga gtaaatctta ctcaaaagac tcacccagta gaggtatttg
3181agccgggagc tgaacatata gttcgcctaa tgactaagaa ttggggcgat aacgatagca
3241tttttcaaga tgtaattgag acaagaggga gagaatatgc tggtttatat gatgacatct
3301ccactcaagg ctggtttatt ggactgatgt gtgcgattgc tcttctcaca ctactattat
3361taactgtttg ctttgtgaag aggaatagag gtggaaagta ctcagttaaa gaaaaggaag
3421atttgcatcc agacccagaa attcagtcag taaaagatga aacctttggt gaatacagtg
3481acagtgatga aaagcctctc aaaggaagcc ttcggtccct taatagggat atgcagccta
3541ctgaaagtgc tgacagctta gtcgaatacg gagagggaga ccatggtctc ttcagtgaag
3601atggatcatt tattggtgcc tacgctggat ctaaggagaa gggatctgtt gaaagcaatg
3661gaagttctac agcaactttt ccccttcggg cattgccaac tttcttgtac aaagtggttg
3721gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
3781accggtggcg cgttaagtcg acaatcaacc tctggatta

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