Construct: ORF ccsbBroad304_11621
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006563.1_s304c1, BRDN0000400068
- Derived from:
- ccsbBroadEn_11621
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMC6 (11322)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11621
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_011524257.3 | 82.9% | 82.9% | 1_273del |
| 2 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_024450557.1 | 76.8% | 76.8% | 1_402del |
| 3 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_011524256.1 | 58.1% | 58.1% | 1_957del |
| 4 | human | 11322 | TMC6 | transmembrane channel like 6 | NM_001127198.2 | 55.1% | 55.1% | 1_1083del |
| 5 | human | 11322 | TMC6 | transmembrane channel like 6 | NM_001321185.1 | 55.1% | 55.1% | 1_1083del |
| 6 | human | 11322 | TMC6 | transmembrane channel like 6 | NM_007267.7 | 55.1% | 55.1% | 1_1083del |
| 7 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_005256995.1 | 55.1% | 55.1% | 1_1083del |
| 8 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_011524255.1 | 55.1% | 55.1% | 1_1083del |
| 9 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_024450555.1 | 55.1% | 55.1% | 1_1083del |
| 10 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_024450556.1 | 55.1% | 55.1% | 1_1083del |
| 11 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_017024107.1 | 47.7% | 47.7% | 1_1083del;1533_1534ins180 |
| 12 | human | 11322 | TMC6 | transmembrane channel like 6 | XM_017024108.1 | 47.7% | 47.7% | 1_1083del;1533_1534ins180 |
| 13 | human | 11322 | TMC6 | transmembrane channel like 6 | XR_243632.1 | 42.2% | 1_1271del;2075_2076ins134;2470_2702del | |
| 14 | human | 11322 | TMC6 | transmembrane channel like 6 | XR_001752420.1 | 21.1% | 1_1271del;2604_6300del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1398
- ORF length:
- 1332
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc tcactctttc ggggagagct accgggtggg cagcacctct ggcatccacg 121 ccatcaccgt cttctgctcc tgggactaca aggtgacgca gaagcgggcc tcccgcctcc 181 agcaggacaa tattcgcacc cggctgaagg agctgctggc cgagtggcag ctgcggcaca 241 gccccaggag cgtgtgcggg aggctgcggc aggcggctgt gctggggctt gtgtggctgc 301 tgtgtctggg gaccgcgctg ggctgcgccg tggccgtcca cgtcttctcg gagttcatga 361 tccagagtcc agaggctgct ggccaggagg ctgtgctgct ggtcctgccc ctggtggttg 421 gcctcctcaa cctgggggcc ccctacctgt gccgtgtcct ggccgccctg gagccgcatg 481 actccccggt actggaggtg tacgtggcca tctgcaggaa cctcatcctc aagctggcca 541 tcctggggac actgtgctac cactggctgg gccgcagggt gggcgtcctg cagggccagt 601 gctgggagga ttttgtgggc caggagctgt accggttcct ggtgatggac ttcgtcctca 661 tgttgctgga cacgcttttt ggggaactgg tgtggaggat tatctccgag aagaagctga 721 agaggaggcg gaagccggag tttgacattg cccggaatgt cctggagctg atttatgggc 781 agactctgac ctggctgggg gtgctcttct cgcccctcct ccccgccgtg cagatcatca 841 agctgctgct cgtcttctat gtcaagaaga ccagccttct ggccaactgc caggcgccgc 901 gccggccctg gctggcctca cacatgagca ccgtcttcct cacgctgctc tgcttccccg 961 ccttcctggg cgccgctgtc ttcctctgct acgccgtctg gcaggtgaag ccctcgagca 1021 cctgcggccc cttccggacc ctggacacca tgtacgaggc cggcagggtg tgggtgcgcc 1081 acctggaggc ggcaggcccc agggtctcct ggctgccctg ggtgcaccgg tacctgatgg 1141 aaaacacctt ctttgtcttc ctggtgtcag ccctgctgct ggccgtgatc tacctcaaca 1201 tccaggtggt gcggggccag cgcaaggtca tctgcctgct caaggagcag atcagcaatg 1261 agggtgagga caaaatcttc ttaatcaaca agcttcactc catctacgag aggaaggaga 1321 gggaggagag gagcagggtt gggacaaccg aggaggctgc ggcaccccct gccctgctca 1381 cagatgaaca ggatgcctac ccaactttct tgtacaaagt ggttggtaag cctatcccta 1441 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 1501 agtcgacaat caacctctgg atta