Construct: ORF ccsbBroad304_11639

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017429.1_s304c1, BRDN0000407740
Derived from:
ccsbBroadEn_11639
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRAPPC8 (22878)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11639
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22878 TRAPPC8 trafficking protein particl... XM_017025617.2 50.9% 50.4% (many diffs)
2 human 22878 TRAPPC8 trafficking protein particl... XM_011525884.3 50.8% 50.3% (many diffs)
3 human 22878 TRAPPC8 trafficking protein particl... XM_006722420.4 49.2% 48.7% (many diffs)
4 human 22878 TRAPPC8 trafficking protein particl... XM_017025616.2 46.8% 46.4% (many diffs)
5 human 22878 TRAPPC8 trafficking protein particl... XM_005258234.3 46.8% 46.3% (many diffs)
6 human 22878 TRAPPC8 trafficking protein particl... NM_014939.4 45.9% 45.5% (many diffs)
7 human 22878 TRAPPC8 trafficking protein particl... XM_005258233.3 45.8% 45.4% (many diffs)
8 human 22878 TRAPPC8 trafficking protein particl... XM_017025615.1 43.5% 42.1% (many diffs)
9 human 22878 TRAPPC8 trafficking protein particl... XR_001753169.2 35.9% (many diffs)
10 human 22878 TRAPPC8 trafficking protein particl... XR_001753168.2 35.8% (many diffs)
11 human 22878 TRAPPC8 trafficking protein particl... XR_001753167.2 35.8% (many diffs)
12 human 22878 TRAPPC8 trafficking protein particl... XM_005258235.3 26.6% 25.3% (many diffs)
13 mouse 75964 Trappc8 trafficking protein particl... NM_029491.2 72.9% 74% (many diffs)
14 mouse 75964 Trappc8 trafficking protein particl... XM_006526333.3 41.8% 42.6% (many diffs)
15 mouse 75964 Trappc8 trafficking protein particl... NM_177038.3 41.7% 42.5% (many diffs)
16 mouse 75964 Trappc8 trafficking protein particl... XM_011247030.2 41.5% 42.3% (many diffs)
17 mouse 75964 Trappc8 trafficking protein particl... XM_011247029.2 41.5% 42.3% (many diffs)
18 mouse 75964 Trappc8 trafficking protein particl... XM_011247028.2 41.3% 42.1% (many diffs)
19 mouse 75964 Trappc8 trafficking protein particl... XM_017318012.1 41.3% 42.1% (many diffs)
20 mouse 75964 Trappc8 trafficking protein particl... XM_017318011.1 41.3% 42.1% (many diffs)
21 mouse 75964 Trappc8 trafficking protein particl... XM_017318013.1 41% 41.8% (many diffs)
22 mouse 75964 Trappc8 trafficking protein particl... XM_011247031.2 40.5% 41.3% (many diffs)
23 mouse 75964 Trappc8 trafficking protein particl... XM_011247032.2 40.1% 40.9% (many diffs)
24 mouse 75964 Trappc8 trafficking protein particl... XM_011247033.2 39.3% 40.2% (many diffs)
25 mouse 75964 Trappc8 trafficking protein particl... XR_001782396.1 32.8% (many diffs)
26 mouse 75964 Trappc8 trafficking protein particl... XR_001782399.1 32.7% (many diffs)
27 mouse 75964 Trappc8 trafficking protein particl... XR_001782397.1 32.6% (many diffs)
28 mouse 75964 Trappc8 trafficking protein particl... XR_001782398.1 32.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2064
ORF length:
1998
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ccagtgtgta caatcagtgc aggagctaat cccggactcc ttcgtcccct
121gtgtcgctgc gctgtgcagc gacgaagccg agcggctcac tcgtctcaat cacctcagct
181tcgcggagct gcttaagccc ttctcccgcc tcacttccga ggttcacatg agagatccta
241ataatcaact tcacgtaatt aaaaatttga agatagcagt aagcaacatt gtcacccagc
301cacctcagcc tggagccatc cggaagcttt tgaatgatgt tgtttctggc agtcagcctg
361cagaaggatt agtagctaat gtgattacag caggagatta tgaccttaac atcagtgcca
421ctactccatg gtttgagtct tacagagaaa cctttcttca gtcgatgcca gcatcggatc
481atgaatttct gaaccactat ttagcatgta tgttggtagc gtcatctagt gaagctgaac
541ctgtggaaca gttttcaaag ttgtcacaag aacagcatcg aattcagcac aacagtgatt
601attcctaccc caagtggttt ataccaaata cacttaaata ctatgtactt ttacatgatg
661taagtgcagg agatgaacag agagctgaat caatttatga agaaatgaaa cagaaatatg
721gaactcaggg ttgctattta cttaaaatta attctcgaac atctaatcga gcatcagatg
781aacagatacc agatccttgg agtcagtatc tccagaaaaa tagtattcaa aaccaggaat
841catatgaaga tggcccttgt actataactt caaataagaa ttctgataat aacttgcttt
901cattggatgg attagataac gaagtcaaag atggcttacc aaataacttt agagctcacc
961cacttcagtt ggagcaatcc agtgaccctt ctaacagtat tgatggccca gatcatctaa
1021gatctgcttc atcgttacat gaaacaaaga aaggaaatac tggaataatt catggtgcat
1081gtttaacact tactgatcac gatagaattc gacagtttat acaagagttc acatttcggg
1141gccttttgcc acatatagag aaaacaatta ggcaattaaa cgatcagcta atatcaagaa
1201aaggtttgag tcgatctcta ttttctgcaa ctaaaaaatg gtttagtggc agtaaagttc
1261cagaaaagag cattaatgac ctgaaaaata catctggctt gctgtatccg ccggaagcac
1321cagaacttca aatcaggaaa atggctgact tatgtttttt ggtgcagcat tatgatttgg
1381cttacagttg ctatcatact gcaaagaaag attttcttaa tgatcaagca atgctttatg
1441cagctggtgc cttggaaatg gcagcagtgt ctgcttttct tcaaccagga gcacctaggc
1501catatcctgc tcattacatg gatacagcaa ttcagacata cagagatatc tgcaagaata
1561tggtgttggc tgaaagatgt gtgttgctta gtgctgaact tttaaaaagc caaggcaaat
1621attcagaggc tgcagctctt ctaatacggt tgaccagtga ggattctgat cttcgaagtg
1681cacttctttt ggaacaggca gcacattgct ttataaacat gaaaagtccc atggttagaa
1741aatatgcatt tcatatgata ttggcaggcc atcgatttag taaagcaggg cagaaaaagc
1801atgctttacg ctgttactgt caagccatgc aagtttacaa aggaaaaggc tggtctcttg
1861cagaggatca cattaatttc actattgggc gccagtccta tactcttaga cagctggata
1921atgctgtgtc tgcttttagg catattctaa ttaatgaaag taaacaatct gctgctcaac
1981agggggcttt cctcagagaa tatctttatg tttacaaggt gactgcttat tttcattcag
2041gaatagatat taaaactgta ttttacccaa ctttcttgta caaagtggtt ggtaagccta
2101tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
2161gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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