Construct: ORF ccsbBroad304_11639
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017429.1_s304c1, BRDN0000407740
- Derived from:
- ccsbBroadEn_11639
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC8 (22878)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11639
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_017025617.2 | 50.9% | 50.4% | (many diffs) |
| 2 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_011525884.3 | 50.8% | 50.3% | (many diffs) |
| 3 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_006722420.4 | 49.2% | 48.7% | (many diffs) |
| 4 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_017025616.2 | 46.8% | 46.4% | (many diffs) |
| 5 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_005258234.3 | 46.8% | 46.3% | (many diffs) |
| 6 | human | 22878 | TRAPPC8 | trafficking protein particl... | NM_014939.4 | 45.9% | 45.5% | (many diffs) |
| 7 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_005258233.3 | 45.8% | 45.4% | (many diffs) |
| 8 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_017025615.1 | 43.5% | 42.1% | (many diffs) |
| 9 | human | 22878 | TRAPPC8 | trafficking protein particl... | XR_001753169.2 | 35.9% | (many diffs) | |
| 10 | human | 22878 | TRAPPC8 | trafficking protein particl... | XR_001753168.2 | 35.8% | (many diffs) | |
| 11 | human | 22878 | TRAPPC8 | trafficking protein particl... | XR_001753167.2 | 35.8% | (many diffs) | |
| 12 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_005258235.3 | 26.6% | 25.3% | (many diffs) |
| 13 | mouse | 75964 | Trappc8 | trafficking protein particl... | NM_029491.2 | 72.9% | 74% | (many diffs) |
| 14 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_006526333.3 | 41.8% | 42.6% | (many diffs) |
| 15 | mouse | 75964 | Trappc8 | trafficking protein particl... | NM_177038.3 | 41.7% | 42.5% | (many diffs) |
| 16 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247030.2 | 41.5% | 42.3% | (many diffs) |
| 17 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247029.2 | 41.5% | 42.3% | (many diffs) |
| 18 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247028.2 | 41.3% | 42.1% | (many diffs) |
| 19 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_017318012.1 | 41.3% | 42.1% | (many diffs) |
| 20 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_017318011.1 | 41.3% | 42.1% | (many diffs) |
| 21 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_017318013.1 | 41% | 41.8% | (many diffs) |
| 22 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247031.2 | 40.5% | 41.3% | (many diffs) |
| 23 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247032.2 | 40.1% | 40.9% | (many diffs) |
| 24 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247033.2 | 39.3% | 40.2% | (many diffs) |
| 25 | mouse | 75964 | Trappc8 | trafficking protein particl... | XR_001782396.1 | 32.8% | (many diffs) | |
| 26 | mouse | 75964 | Trappc8 | trafficking protein particl... | XR_001782399.1 | 32.7% | (many diffs) | |
| 27 | mouse | 75964 | Trappc8 | trafficking protein particl... | XR_001782397.1 | 32.6% | (many diffs) | |
| 28 | mouse | 75964 | Trappc8 | trafficking protein particl... | XR_001782398.1 | 32.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2064
- ORF length:
- 1998
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc ccagtgtgta caatcagtgc aggagctaat cccggactcc ttcgtcccct 121 gtgtcgctgc gctgtgcagc gacgaagccg agcggctcac tcgtctcaat cacctcagct 181 tcgcggagct gcttaagccc ttctcccgcc tcacttccga ggttcacatg agagatccta 241 ataatcaact tcacgtaatt aaaaatttga agatagcagt aagcaacatt gtcacccagc 301 cacctcagcc tggagccatc cggaagcttt tgaatgatgt tgtttctggc agtcagcctg 361 cagaaggatt agtagctaat gtgattacag caggagatta tgaccttaac atcagtgcca 421 ctactccatg gtttgagtct tacagagaaa cctttcttca gtcgatgcca gcatcggatc 481 atgaatttct gaaccactat ttagcatgta tgttggtagc gtcatctagt gaagctgaac 541 ctgtggaaca gttttcaaag ttgtcacaag aacagcatcg aattcagcac aacagtgatt 601 attcctaccc caagtggttt ataccaaata cacttaaata ctatgtactt ttacatgatg 661 taagtgcagg agatgaacag agagctgaat caatttatga agaaatgaaa cagaaatatg 721 gaactcaggg ttgctattta cttaaaatta attctcgaac atctaatcga gcatcagatg 781 aacagatacc agatccttgg agtcagtatc tccagaaaaa tagtattcaa aaccaggaat 841 catatgaaga tggcccttgt actataactt caaataagaa ttctgataat aacttgcttt 901 cattggatgg attagataac gaagtcaaag atggcttacc aaataacttt agagctcacc 961 cacttcagtt ggagcaatcc agtgaccctt ctaacagtat tgatggccca gatcatctaa 1021 gatctgcttc atcgttacat gaaacaaaga aaggaaatac tggaataatt catggtgcat 1081 gtttaacact tactgatcac gatagaattc gacagtttat acaagagttc acatttcggg 1141 gccttttgcc acatatagag aaaacaatta ggcaattaaa cgatcagcta atatcaagaa 1201 aaggtttgag tcgatctcta ttttctgcaa ctaaaaaatg gtttagtggc agtaaagttc 1261 cagaaaagag cattaatgac ctgaaaaata catctggctt gctgtatccg ccggaagcac 1321 cagaacttca aatcaggaaa atggctgact tatgtttttt ggtgcagcat tatgatttgg 1381 cttacagttg ctatcatact gcaaagaaag attttcttaa tgatcaagca atgctttatg 1441 cagctggtgc cttggaaatg gcagcagtgt ctgcttttct tcaaccagga gcacctaggc 1501 catatcctgc tcattacatg gatacagcaa ttcagacata cagagatatc tgcaagaata 1561 tggtgttggc tgaaagatgt gtgttgctta gtgctgaact tttaaaaagc caaggcaaat 1621 attcagaggc tgcagctctt ctaatacggt tgaccagtga ggattctgat cttcgaagtg 1681 cacttctttt ggaacaggca gcacattgct ttataaacat gaaaagtccc atggttagaa 1741 aatatgcatt tcatatgata ttggcaggcc atcgatttag taaagcaggg cagaaaaagc 1801 atgctttacg ctgttactgt caagccatgc aagtttacaa aggaaaaggc tggtctcttg 1861 cagaggatca cattaatttc actattgggc gccagtccta tactcttaga cagctggata 1921 atgctgtgtc tgcttttagg catattctaa ttaatgaaag taaacaatct gctgctcaac 1981 agggggcttt cctcagagaa tatctttatg tttacaaggt gactgcttat tttcattcag 2041 gaatagatat taaaactgta ttttacccaa ctttcttgta caaagtggtt ggtaagccta 2101 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 2161 gcgttaagtc gacaatcaac ctctggatta