Construct: ORF ccsbBroad304_11722

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013912.1_s304c1, BRDN0000404903
Derived from:
ccsbBroadEn_11722
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
JADE2 (23338)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11722
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23338 JADE2 jade family PHD finger 2 NM_001289984.2 100% 100%
2 human 23338 JADE2 jade family PHD finger 2 NM_015288.6 99.8% 99.8% 1550_1551insAGC
3 human 23338 JADE2 jade family PHD finger 2 XM_017009282.1 94.9% 94.8% 1550_1567del;1573_1680del
4 human 23338 JADE2 jade family PHD finger 2 NM_001308143.2 94.8% 94.8% 1552_1680del
5 human 23338 JADE2 jade family PHD finger 2 XM_005271945.2 94.8% 94.8% 1552_1680del
6 human 23338 JADE2 jade family PHD finger 2 XM_005271946.2 94.8% 94.8% 1552_1680del
7 human 23338 JADE2 jade family PHD finger 2 XM_005271948.4 94.8% 94.8% 1552_1680del
8 human 23338 JADE2 jade family PHD finger 2 XM_011543291.3 94.8% 94.8% 1552_1680del
9 human 23338 JADE2 jade family PHD finger 2 XM_024446007.1 93.2% 91.6% (many diffs)
10 human 23338 JADE2 jade family PHD finger 2 NM_001289985.2 93% 93% 1_48del;1600_1728del
11 mouse 76901 Jade2 jade family PHD finger 2 NM_199299.3 83% 86.5% (many diffs)
12 mouse 76901 Jade2 jade family PHD finger 2 XM_006534469.3 83% 86.5% (many diffs)
13 mouse 76901 Jade2 jade family PHD finger 2 XM_006534470.3 83% 86.5% (many diffs)
14 mouse 76901 Jade2 jade family PHD finger 2 XM_011249309.2 83% 86.5% (many diffs)
15 mouse 76901 Jade2 jade family PHD finger 2 XM_017314832.1 83% 86.5% (many diffs)
16 mouse 76901 Jade2 jade family PHD finger 2 XM_006534468.3 79.6% 82.9% (many diffs)
17 mouse 76901 Jade2 jade family PHD finger 2 XM_006534466.3 76.4% 79.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2439
ORF length:
2373
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga agagaagagg cgaaaatact ccatcagcag tgacaactct gacaccactg
121acagtcatgc gacatctaca tccgcatcaa gatgctccaa actgcccagc agcaccaagt
181cgggctggcc ccgacagaac gaaaagaagc cctccgaggt tttccggaca gacttgatca
241cagccatgaa gatcccggac tcataccagc tcagcccgga tgactactac atcctggcag
301acccatggcg acaggaatgg gagaaaggtg tgcaggtgcc tgccggggca gaggccatcc
361cagagcccgt ggtgaggatc ctcccaccac tggaaggccc ccctgcccag gcatccccga
421gcagcaccat gcttggtgag ggctcccagc ctgattggcc agggggcagc cgctatgact
481tggacgagat tgatgcctac tggctggagc tcatcaactc ggagcttaag gagatggaga
541ggccggagct ggacgagctg acattagagc gtgtgctgga ggagctggag accctgtgcc
601accagaatat ggccagggcc attgagacgc aggaggggct gggcatcgag tacgacgagg
661atgttgtctg cgacgtgtgt cgctctcctg agggcgagga tggcaacgag atggtcttct
721gtgacaagtg caacgtctgt gtgcatcagg catgctacgg gatcctcaag gtgcccacgg
781gcagctggct gtgccggacg tgtgccctgg gtgtccagcc aaagtgcctg ctctgcccca
841agcgaggagg agccttgaag cccactagaa gtgggaccaa gtgggtgcat gtcagctgtg
901ccctatggat tcctgaggtc agcatcggct gcccagagaa gatggagccc atcaccaaga
961tctcgcatat cccagccagc cgctgggctc tgtcctgcag cctctgcaag gaatgcacag
1021gcacctgcat ccagtgttcc atgccttcct gcgtcacagc gttccatgtc acatgcgcct
1081ttgaccacgg cctggaaatg cggactatat tagcagacaa cgatgaggtc aagttcaagt
1141cattctgcca ggagcacagt gacgggggcc cacgtaatga gcccacatct gagcccacgg
1201aacccagcca ggctggcgag gacctggaaa aggtgaccct gcgcaagcag cggctgcagc
1261agctagagga ggacttctac gagctggtgg agccggctga ggtggctgag cggctggacc
1321tggctgaggc actggtcgac ttcatctacc agtactggaa gctgaagagg aaagccaatg
1381ccaaccagcc gctgctgacc cccaagaccg acgaggtgga caacctggcc cagcaggagc
1441aggacgtcct ctaccgccgc ctgaagctct tcacccatct gcggcaggac ctagagaggg
1501ttagaaatct gtgctacatg gtgacaaggc gcgagagaac gaaacacgcc atctgcaaac
1561tccaggagca gatattccac ctgcagatga aacttattga acaggatctg tgtcgagcag
1621gcctgtccac ctcattcccc atcgatggca ccttcttcaa cagctggctg gcacagtcgg
1681tgcagatcac agcagagaac atggccatga gcgagtggcc actgaacaat gggcaccgcg
1741aggaccctgc tccagggctg ctgtcagagg aactgctgca ggacgaggag acactgctca
1801gcttcatgcg ggacccctcg ctgcgacctg gtgaccctgc taggaaggcc cgaggccgca
1861cccgcctgcc tgccaagaag aaaccaccac caccaccacc gcaggacggg cctggttcac
1921ggacgactcc agacaaagcc cccaagaaga cctggggcca ggatgcaggc agtggcaagg
1981ggggtcaagg gccacctacc aggaagccac cacgtcggac atcttctcac ttgccgtcca
2041gccctgcagc cggggactgt cccatcctag ccacccctga aagccccccg ccactggccc
2101ctgagacccc ggacgaggca gcctcagtag ctgctgactc agatgtccaa gtgcctggcc
2161ctgcagcaag ccctaagcct ttgggccggc tccggccacc ccgcgagagc aaggtaaccc
2221ggagattgcc gggtgccagg cctgatgctg ggatgggacc accttcagct gtggctgaga
2281ggcccaaggt cagcctgcat tttgacactg agactgatgg ctacttctct gatggggaga
2341tgagcgactc agatgtagag gccgaggacg gtggggtgca gcggggtccc cgggaggcag
2401gggcagagga ggtggtccgc atgggcgtac tggcctccta cccaactttc ttgtacaaag
2461tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
2521gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)