Construct: ORF ccsbBroad304_11757

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010985.1_s304c1, BRDN0000410763
Derived from:
ccsbBroadEn_11757
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CADM1 (23705)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11757
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23705 CADM1 cell adhesion molecule 1 NM_001098517.2 90.5% 90.8% (many diffs)
2 human 23705 CADM1 cell adhesion molecule 1 XM_005271494.3 88.2% 88.4% (many diffs)
3 human 23705 CADM1 cell adhesion molecule 1 NM_014333.4 84.8% 85% (many diffs)
4 human 23705 CADM1 cell adhesion molecule 1 NM_001301045.2 84.7% 84.8% (many diffs)
5 human 23705 CADM1 cell adhesion molecule 1 NM_001301044.2 82.8% 83% (many diffs)
6 human 23705 CADM1 cell adhesion molecule 1 NM_001301043.2 79.7% 79.8% (many diffs)
7 human 23705 CADM1 cell adhesion molecule 1 XM_017017457.2 71.1% 69.8% (many diffs)
8 mouse 54725 Cadm1 cell adhesion molecule 1 NM_001025600.1 82.5% 88.7% (many diffs)
9 mouse 54725 Cadm1 cell adhesion molecule 1 NM_207676.2 80.4% 86.4% (many diffs)
10 mouse 54725 Cadm1 cell adhesion molecule 1 NM_018770.3 77.3% 83.1% (many diffs)
11 mouse 54725 Cadm1 cell adhesion molecule 1 XM_006510497.3 77.2% 82.9% (many diffs)
12 mouse 54725 Cadm1 cell adhesion molecule 1 NM_207675.2 75.5% 81.1% (many diffs)
13 mouse 54725 Cadm1 cell adhesion molecule 1 NM_001310841.1 72.7% 78% (many diffs)
14 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313489.1 46.7% 49.6% (many diffs)
15 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313487.1 45% 47.7% (many diffs)
16 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313488.1 45% 47.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1227
ORF length:
1161
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gagtgtagtg ctgccgagcg gatcccagtg tgcggcggca gcggcggcgg
121cggcgcctcc cgggctccgg ctccggcttc tgctgttgct cttctccgcc gcggcactga
181tccccacagg tgatgggcag aatctgttta cgaaagacgt gacagtgatc gagggagagg
241ttgcgaccat cagttgccaa gtcaataaga gtgacgactc tgtgattcag ctactgaatc
301ccaacaggca gaccatttat ttcagggact tcaggccttt gaaggacagc aggtttcagt
361tgctgaattt ttctagcagt gaactcaaag tatcattgac aaacgtctca atttctgatg
421aaggaagata cttttgccag ctctataccg atcccccaca ggaaagttac accaccatca
481cagtcctggt cccaccacgt aatctgatga tcgatatcca gaaagacact gcggtggaag
541gtgaggagat tgaagtcaac tgcactgcta tggccagcaa gccagccacg actatcaggt
601ggttcaaagg gaacacagag ctaaaaggca aatcggaggt ggaagagtgg tcagacatgt
661acactgtgac cagtcagctg atgctgaagg tgcacaagga ggacgatggg gtcccagtga
721tctgccaggt ggagcaccct gcggtcactg gaaacctgca gacccagcgg tatctagaag
781tacagtataa gcctcaagtg cacattcaga tgacttatcc tctacaaggc ttaacccggg
841aaggggacgc gcttgagtta acatgtgaag ccatcgggaa gccccagcct gtgatggtaa
901cttgggtgag agtcgatgat gaaatgcctc aacacgccgt actgtctggg cccaacctgt
961tcatcaataa cctaaacaaa acagataatg gtacataccg ctgtgaagct tcaaacatag
1021tggggaaagc tcactcggat tatatgctgt atgtatacga ttcccgagca ggtgaagaag
1081gctcgatcag ggcagtggat catgccgtga tcggtggcgt cgtggcggtg gtggtgttcg
1141ccatgctgtg cttgctcatc attctggggc gctattttgc cagacataaa ggcctgtttt
1201ctctaacctc ctctcccaga ataaagtgcc caactttctt gtacaaagtg gttggtaagc
1261ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1321ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)