Construct: ORF ccsbBroad304_11862

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012737.1_s304c1, BRDN0000407362
Derived from:
ccsbBroadEn_11862
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11862
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27303 RBMS3 RNA binding motif single st... XM_017006180.1 62% 61.6% 1_27del;774_775delAG;782_1212delinsA
2 human 27303 RBMS3 RNA binding motif single st... XM_017006181.1 61.7% 61.3% (many diffs)
3 human 27303 RBMS3 RNA binding motif single st... XM_005265062.1 59.8% 59.4% 1_27del;774_775delAG;782_1257delinsA
4 human 27303 RBMS3 RNA binding motif single st... NM_014483.3 59.6% 59.2% 1_27del;774_775delAG;782_1260delinsA
5 human 27303 RBMS3 RNA binding motif single st... XM_005265061.2 59.6% 59.2% 1_27del;774_775delAG;782_1260delinsA
6 human 27303 RBMS3 RNA binding motif single st... NM_001177711.2 59.5% 59.1% 1_27del;774_775delAG;782_1263delinsA
7 human 27303 RBMS3 RNA binding motif single st... NM_001003792.3 59.4% 59% (many diffs)
8 human 27303 RBMS3 RNA binding motif single st... XM_017006179.1 59.3% 58.9% (many diffs)
9 human 27303 RBMS3 RNA binding motif single st... NM_001177712.1 57.8% 57.5% (many diffs)
10 human 27303 RBMS3 RNA binding motif single st... XM_024453454.1 57.4% 57.1% 1_27del;774_775delAG;782_1308delinsA
11 human 27303 RBMS3 RNA binding motif single st... NM_001003793.3 57.3% 56.9% 1_27del;774_775delAG;782_1311delinsA
12 human 27303 RBMS3 RNA binding motif single st... XM_017006178.1 57.2% 56.8% (many diffs)
13 human 27303 RBMS3 RNA binding motif single st... NM_001330696.1 57.1% 56.7% (many diffs)
14 human 27303 RBMS3 RNA binding motif single st... XM_017006182.1 57.1% 56.7% 0_1ins75;672_673delAG;680_1110delinsA
15 human 27303 RBMS3 RNA binding motif single st... XM_005265063.2 34.7% 30.1% (many diffs)
16 human 27303 RBMS3 RNA binding motif single st... XM_005265065.5 33.2% 29.2% (many diffs)
17 mouse 207181 Rbms3 RNA binding motif, single s... NM_001172126.1 57.2% 61.3% (many diffs)
18 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313253.1 56.8% 60.9% (many diffs)
19 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313252.1 55.5% 59.5% (many diffs)
20 mouse 207181 Rbms3 RNA binding motif, single s... NM_001172124.1 55% 58.9% (many diffs)
21 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313251.1 54.6% 58.5% (many diffs)
22 mouse 207181 Rbms3 RNA binding motif, single s... NM_178660.4 53.4% 57.2% (many diffs)
23 mouse 207181 Rbms3 RNA binding motif, single s... NM_001172122.1 53.3% 57.1% (many diffs)
24 mouse 207181 Rbms3 RNA binding motif, single s... NM_001172123.1 51.3% 55% (many diffs)
25 mouse 207181 Rbms3 RNA binding motif, single s... NM_001172121.1 47.4% 48.5% (many diffs)
26 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313248.1 37.9% 38.9% (many diffs)
27 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313247.1 28.3% 29.1% (many diffs)
28 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313246.1 27.4% 28.2% (many diffs)
29 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313245.1 27.2% 28% (many diffs)
30 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313244.1 26.9% 27.7% (many diffs)
31 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313242.1 26.9% 27.7% (many diffs)
32 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313243.1 26.9% 27.7% (many diffs)
33 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313241.1 26.9% 27.7% (many diffs)
34 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313240.1 26.6% 27.4% (many diffs)
35 mouse 207181 Rbms3 RNA binding motif, single s... XM_017313239.1 26.4% 27.2% (many diffs)
36 mouse 207181 Rbms3 RNA binding motif, single s... XM_006512005.3 26.4% 27.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
819
ORF length:
753
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgta cccccagtac acttactact atcctcatta tctccaaacc aagcagtcct
121atgcaccagc tccccacccc atggctcctc ccagccccag cacaaacagc agcagcaaca
181acagcagcaa caacagcagc ggggaacagt tgagtaaaac caacctgtac attcgaggcc
241tcccaccagg caccactgac caggacctaa tcaagctgtg ccaaccgtat ggaaaaattg
301tatctacaaa ggcaattctt gacaaaaaca caaatcagtg caaaggttat ggttttgtag
361attttgacag tcctgcagcc gcacagaaag cggtagcatc tctcaaggca aatggcgtgc
421aggcacagat ggctaagcaa caagagcaag acccaacaaa cctatacatc tcaaatctcc
481ccatttctat ggatgagcag gagcttgaga atatgctgaa accctttgga catgtcattt
541ccacaagaat actaagagac gctaatggag tcagcagagg tgttggcttt gccagaatgg
601agtctactga aaaatgtgaa gtggtaattc aacattttaa tggaaaatat ctgaaaacac
661caccaggcat cccagccccc agtgagcctt tgctgtgcaa attcgctgat ggaggacaaa
721agaagcgaca gaatcaaagc aaatataccc agaatgggag gccttggccc agggaaggag
781aggctggcat ggctttgacc tatgacccca cctgccaata cccaactttc ttgtacaaag
841tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
901gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)