Transcript: Human NM_001177711.2

Homo sapiens RNA binding motif single stranded interacting protein 3 (RBMS3), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
RBMS3 (27303)
Length:
8401
CDS:
612..1877

Additional Resources:

NCBI RefSeq record:
NM_001177711.2
NBCI Gene record:
RBMS3 (27303)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001177711.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000153312 GCAGATGAATCACCTTTCGTT pLKO.1 1625 CDS 100% 3.000 4.200 N RBMS3 n/a
2 TRCN0000421927 ATGGACCATCCCATGTCAATG pLKO_005 1572 CDS 100% 10.800 8.640 N RBMS3 n/a
3 TRCN0000153403 GCTGCCATACAGAATGGATTT pLKO.1 1386 CDS 100% 10.800 7.560 N RBMS3 n/a
4 TRCN0000152525 GACATCTATCACGCCATTCAT pLKO.1 1451 CDS 100% 5.625 3.938 N RBMS3 n/a
5 TRCN0000152012 CACAAATCAGTGCAAAGGTTA pLKO.1 902 CDS 100% 4.950 3.465 N RBMS3 n/a
6 TRCN0000151205 GACATGTCATTTCCACAAGAA pLKO.1 1102 CDS 100% 4.950 3.465 N RBMS3 n/a
7 TRCN0000157243 CATGGACCATCCCATGTCAAT pLKO.1 1571 CDS 100% 0.495 0.347 N RBMS3 n/a
8 TRCN0000414938 TGAGCCTTTGCTGTGCAAATT pLKO_005 1256 CDS 100% 13.200 7.920 N RBMS3 n/a
9 TRCN0000096890 GCTGTTTCTATTGAAGGTGTT pLKO.1 1728 CDS 100% 4.050 2.430 N Rbms3 n/a
10 TRCN0000151605 GCTGTTTCTATTGAAGGTGTT pLKO.1 1728 CDS 100% 4.050 2.430 N RBMS3 n/a
11 TRCN0000158276 CAGCAACAACAGCAGCAACAA pLKO.1 746 CDS 100% 4.950 2.475 Y RBMS3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001177711.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11862 pDONR223 100% 59.5% 59.1% None 1_27del;774_775delAG;782_1263delinsA n/a
2 ccsbBroad304_11862 pLX_304 0% 59.5% 59.1% V5 1_27del;774_775delAG;782_1263delinsA n/a
3 TRCN0000469899 GCTCCCGTCAAATCGATTTGTAGC pLX_317 61.1% 59.5% 59.1% V5 1_27del;774_775delAG;782_1263delinsA n/a
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