Construct: ORF ccsbBroad304_11888

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006627.1_s304c1, BRDN0000404730
Derived from:
ccsbBroadEn_11888
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX24 (28966)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11888
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 28966 SNX24 sorting nexin 24 NM_014035.4 90% 87.5% (many diffs)
2 human 28966 SNX24 sorting nexin 24 XM_006714592.4 88.7% 87.2% (many diffs)
3 human 28966 SNX24 sorting nexin 24 XM_011543350.3 74.6% 73.3% (many diffs)
4 human 28966 SNX24 sorting nexin 24 XM_017009394.1 74.2% 71.5% (many diffs)
5 human 28966 SNX24 sorting nexin 24 XM_005271972.5 71.6% 69.4% (many diffs)
6 human 28966 SNX24 sorting nexin 24 XM_011543349.3 62% 60.1% (many diffs)
7 human 28966 SNX24 sorting nexin 24 XM_011543352.1 47.7% 44.2% (many diffs)
8 human 28966 SNX24 sorting nexin 24 XM_017009396.1 47.7% 44.2% (many diffs)
9 human 28966 SNX24 sorting nexin 24 XM_017009395.1 46.1% 44.1% (many diffs)
10 human 28966 SNX24 sorting nexin 24 XR_001742058.1 43.2% (many diffs)
11 human 28966 SNX24 sorting nexin 24 NR_146145.1 19.9% (many diffs)
12 mouse 69226 Snx24 sorting nexing 24 NM_029394.3 82.3% 85.7% (many diffs)
13 mouse 69226 Snx24 sorting nexing 24 XM_006526220.3 56.4% 58.7% (many diffs)
14 mouse 69226 Snx24 sorting nexing 24 XM_006526221.3 47.4% 48.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
543
ORF length:
477
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggtctacatc ccgtcctttc gctatgaaga gagcgacctg gagcggggat
121acacggtgtt taagatagaa gtgctaatga atggaagaaa acattttgtt gaaaagagat
181acagcgaatt tcatgctttg cacaaaaagc ttaagaaatg tataaaaact ccagaaatcc
241cttctaaaca tgttaggaac tgggtcccca aagtcttgga acagcgacga caaggcttgg
301aaacatactt acaggctgtc attttagaaa atgaagaact tcccaaactg tttcttgatt
361tcctaaatgt gcgacacttg ccctctctac caaaggcaga aagttgtgga tcttttgatg
421aaacagagtc tgaagagtca agcaaactgt cccaccagcc tgtgctgctg ttcctcaggg
481atccatatgt cttgcctgca gccagcggta atcaaacctg tcatctgcta acagctcttt
541actgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
601tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
661tctggatta

Download FASTA (ORF) (Full)