Transcript: Human NM_014035.4

Homo sapiens sorting nexin 24 (SNX24), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
SNX24 (28966)
Length:
1987
CDS:
22..531

Additional Resources:

NCBI RefSeq record:
NM_014035.4
NBCI Gene record:
SNX24 (28966)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014035.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380214 GGAGTCCTCCATGGGATATTT pLKO_005 487 CDS 100% 15.000 21.000 N SNX24 n/a
2 TRCN0000382181 TGTAGCTGCCAGCGTAGAAAC pLKO_005 764 3UTR 100% 10.800 15.120 N SNX24 n/a
3 TRCN0000134927 CGCACCATTTGCTAATTGAAA pLKO.1 858 3UTR 100% 5.625 7.875 N SNX24 n/a
4 TRCN0000381626 ACTCTTCTCACCGTGAGATTT pLKO_005 948 3UTR 100% 13.200 10.560 N SNX24 n/a
5 TRCN0000134280 GCCACAGGATTTCATGTTATT pLKO.1 1507 3UTR 100% 13.200 10.560 N SNX24 n/a
6 TRCN0000380933 AGTCGCACCATTTGCTAATTG pLKO_005 855 3UTR 100% 13.200 9.240 N SNX24 n/a
7 TRCN0000379674 ACAGCTCTAGCTAGTGGTAAA pLKO_005 627 3UTR 100% 10.800 7.560 N SNX24 n/a
8 TRCN0000133890 CCAGAAATCCCTTCTAAACAT pLKO.1 187 CDS 100% 5.625 3.938 N SNX24 n/a
9 TRCN0000134320 GAAGTGCTAATGAATGGAAGA pLKO.1 94 CDS 100% 4.050 2.835 N SNX24 n/a
10 TRCN0000135685 CAAAGGCAGAAAGTTGTGGAT pLKO.1 347 CDS 100% 2.640 1.848 N SNX24 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014035.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03046 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03046 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000491504 GTATCCACATATGTTTTGTTCTCC pLX_317 54% 100% 100% V5 n/a
4 ccsbBroadEn_11888 pDONR223 100% 90% 87.5% None (many diffs) n/a
5 ccsbBroad304_11888 pLX_304 0% 90% 87.5% V5 (many diffs) n/a
6 TRCN0000465263 AGGAATGTTACTACTGCAGGTCGC pLX_317 51.1% 90% 87.5% V5 (many diffs) n/a
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