Construct: ORF ccsbBroad304_11942

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003754.1_s304c1, BRDN0000409377
Derived from:
ccsbBroadEn_11942
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
THAP4 (51078)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11942
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51078 THAP4 THAP domain containing 4 NM_001164356.1 65.3% 65% 1_1delAins250;3_4insTCGCCCAGCCGC
2 human 51078 THAP4 THAP domain containing 4 NM_015963.6 43.6% 43.6% 1_975del
3 human 51078 THAP4 THAP domain containing 4 XM_017004256.1 41.9% 41.9% 1_1047del
4 human 51078 THAP4 THAP domain containing 4 XM_011511291.2 40.1% 40.1% 1_1047del;1685_1765del
5 human 51078 THAP4 THAP domain containing 4 XM_005247016.4 35.4% 35.4% 1_1296del;1934_2014del
6 mouse 67026 Thap4 THAP domain containing 4 NM_001310761.1 58.3% 60.7% (many diffs)
7 mouse 67026 Thap4 THAP domain containing 4 NM_025920.3 39.6% 40.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
822
ORF length:
756
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc catcaacgag gtcatcctgt cggcgtcagg ggcctgcaag ctcatcgact
121cactgcactc ctactgcttc tcctcccggc agaacaagag ccaggtgtgc tgcctgcggg
181agcaggtgga gaagaagaac ggcgagctga agagcctgcg gcagagggtc agccgctccg
241acagccaggt gcggaagcta caggagaagc tggatgagct gaggagagtg agcgtcccct
301atccaagtag cctgctgtcg cccagccgcg agccccccaa gatgaaccca gtggtggagc
361cactgtcctg gatgctgggc acctggctgt cggacccacc tggagccggg acctacccca
421cactgcagcc cttccagtac ctggaggagg ttcacatctc ccacgtgggc cagcccatgc
481tgaacttctc gttcaactcc ttccacccgg acacgcgcaa gccgatgcac agagagtgtg
541gcttcattcg cctcaagccc gacaccaaca aggtggcctt tgtcagcgcc cagaacacag
601gcgtggtgga agtggaggag ggcgaggtga acgggcagga gctgtgcatc gcatcccact
661ccatcgccag gatctccttc gccaaggagc cccacgtaga gcagatcacc cggaagttca
721ggctgaattc tgaaggcaaa cttgagcaga cggtctccat ggcaaccacg acacagccaa
781tgactcagca tcttcacgtc acctacaaga aggtgacccc gtacccaact ttcttgtaca
841aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
901ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)