Transcript: Mouse NM_001310761.1

Mus musculus THAP domain containing 4 (Thap4), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Thap4 (67026)
Length:
709
CDS:
67..564

Additional Resources:

NCBI RefSeq record:
NM_001310761.1
NBCI Gene record:
Thap4 (67026)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001310761.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000184276 GCAAACTTGAACAGACGGTCT pLKO.1 476 CDS 100% 2.160 3.024 N Thap4 n/a
2 TRCN0000350134 GCAAACTTGAACAGACGGTCT pLKO_005 476 CDS 100% 2.160 3.024 N Thap4 n/a
3 TRCN0000196076 GCCTATGCTCAACTTCTCGTT pLKO.1 213 CDS 100% 2.640 2.112 N Thap4 n/a
4 TRCN0000319846 GCCTATGCTCAACTTCTCGTT pLKO_005 213 CDS 100% 2.640 2.112 N Thap4 n/a
5 TRCN0000184248 GACACCAACAAAGTGGCCTTT pLKO.1 301 CDS 100% 4.050 2.835 N Thap4 n/a
6 TRCN0000350198 GACACCAACAAAGTGGCCTTT pLKO_005 301 CDS 100% 4.050 2.835 N Thap4 n/a
7 TRCN0000136611 CACAGAGAGTGTGGCTTCATT pLKO.1 268 CDS 100% 5.625 3.938 N THAP4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001310761.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11942 pDONR223 100% 58.3% 60.7% None (many diffs) n/a
2 ccsbBroad304_11942 pLX_304 0% 58.3% 60.7% V5 (many diffs) n/a
3 TRCN0000473321 ATACTAGCCTTCTCAAACGCGGCT pLX_317 55.5% 58.3% 60.7% V5 (many diffs) n/a
4 ccsbBroadEn_11943 pDONR223 100% 28.7% 28.5% None (many diffs) n/a
5 ccsbBroad304_11943 pLX_304 0% 28.7% 28.5% V5 (many diffs) n/a
6 TRCN0000466277 ACCACGTATTGTGGCGGGGTTCAA pLX_317 69.6% 28.7% 28.5% V5 (many diffs) n/a
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