Construct: ORF ccsbBroad304_11948

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008441.1_s304c1, BRDN0000402513
Derived from:
ccsbBroadEn_11948
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRNT1 (51095)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11948
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159942.2 17.4% 1_78del;146C>T;250_975del
2 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159944.2 13.3% 1_377del;445C>T;549_1274del
3 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_001302946.2 12.8% 12% (many diffs)
4 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_001367321.1 12.2% 11.4% (many diffs)
5 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_001367322.1 12.2% 11.4% (many diffs)
6 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_001367323.1 12.2% 11.4% (many diffs)
7 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_182916.3 12.2% 11.4% (many diffs)
8 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159943.2 8.4% 1_1106del;1174C>T;1278_2003del
9 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159938.1 7.7% (many diffs)
10 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159939.1 7.5% (many diffs)
11 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159940.1 7.5% (many diffs)
12 human 51095 TRNT1 tRNA nucleotidyl transferase 1 XR_001740168.2 6.2% (many diffs)
13 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159935.1 6.1% (many diffs)
14 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159941.1 4.8% (many diffs)
15 human 51095 TRNT1 tRNA nucleotidyl transferase 1 XR_001740169.2 4.5% (many diffs)
16 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159936.1 3.7% (many diffs)
17 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159934.1 3.5% (many diffs)
18 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159937.1 2.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
237
ORF length:
171
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gaggtgcctg tatcattggc acaggccagt gctgaaccgt aggtggagta
121ggctgtgcct tctgaagcag tatctattca caatgaagtt gcagtctccc gaattccagt
181cacttttcac agaaggactg aagagtctga caggtataaa tgctttccat gagaactgcc
241caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
301ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
361tta

Download FASTA (ORF) (Full)