Construct: ORF ccsbBroad304_12160

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011826.1_s304c1, BRDN0000409853
Derived from:
ccsbBroadEn_12160
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM39B (55116)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12160
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55116 TMEM39B transmembrane protein 39B NM_001319678.2 79.8% 79.8% 1_177del
2 human 55116 TMEM39B transmembrane protein 39B NM_001319679.2 79.8% 79.8% 1_177del
3 human 55116 TMEM39B transmembrane protein 39B XM_011541684.3 79.8% 79.8% 1_177del
4 human 55116 TMEM39B transmembrane protein 39B NM_001319677.1 64.1% 64.1% 1_393del
5 human 55116 TMEM39B transmembrane protein 39B XM_005270988.2 64.1% 64.1% 1_393del
6 human 55116 TMEM39B transmembrane protein 39B XM_011541683.1 64.1% 64.1% 1_393del
7 human 55116 TMEM39B transmembrane protein 39B XM_017001595.1 62% 62% 1_429del
8 human 55116 TMEM39B transmembrane protein 39B NM_018056.4 47.5% 47.5% 1_774del
9 human 55116 TMEM39B transmembrane protein 39B XR_001737262.1 44.2% 1_587del;929_1031del;1393_1588del
10 human 55116 TMEM39B transmembrane protein 39B XR_002956975.1 36.5% 1_920del;1262_1364del;1726_1921del
11 human 55116 TMEM39B transmembrane protein 39B XM_006710724.2 34.1% 32.4% (many diffs)
12 human 55116 TMEM39B transmembrane protein 39B XM_006710725.4 33% 31.5% (many diffs)
13 mouse 230770 Tmem39b transmembrane protein 39b XM_006503046.2 59.5% 63.5% (many diffs)
14 mouse 230770 Tmem39b transmembrane protein 39b XM_011240504.1 59.5% 63.5% (many diffs)
15 mouse 230770 Tmem39b transmembrane protein 39b XM_006503045.2 57.6% 61.5% (many diffs)
16 mouse 230770 Tmem39b transmembrane protein 39b NM_199305.1 44.1% 47.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
768
ORF length:
702
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc cacccatgcc tgctgcctgt cacccagcct catccgcagt gaggtggagt
121tcctcaagat ggacttcaac tggcgcatga aggaagtgct cgtcagctcc atgctgagcg
181cctactatgt ggcctttgtg cctgtctggt tcgtgaagaa cacacattac tatgacaagc
241gctggtcctg tgaactcttc ctgctggtgt ccatcagcac ctccgtgatc ctcatgcagc
301acctgctgcc tgccagctac tgtgacctgc tgcacaaggc cgccgcccat ctgggctgtt
361ggcagaaggt ggacccagcg ctgtgctcca acgtgctgca gcacccgtgg actgaagaat
421gcatgtggcc gcagggcgtg ctggtgaagc acagcaagaa cgtctacaaa gccgtaggcc
481actacaacgt ggctatcccc tctgacgtct cccacttccg cttccatttc tttttcagca
541aacccctgcg gatcctcaac atcctcctgc tgctggaggg cgctgtcatt gtctatcagc
601tgtactccct aatgtcctct gaaaagtggc accagaccat ctcgctggcc ctcatcctct
661tcagcaacta ctatgccttc ttcaagctgc tccgggaccg cttggtattg ggcaaggcct
721actcatactc tgctagcccc cagagagacc tggaccaccg tttctcctgc ccaactttct
781tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
841aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)