Transcript: Human XR_002956975.1

PREDICTED: Homo sapiens transmembrane protein 39B (TMEM39B), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TMEM39B (55116)
Length:
1921
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002956975.1
NBCI Gene record:
TMEM39B (55116)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002956975.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242805 ATCCGTTTGGGATGTACATTC pLKO_005 733 3UTR 100% 10.800 15.120 N TMEM39B n/a
2 TRCN0000242808 CTATCAGCTGTACTCCCTAAT pLKO_005 1551 3UTR 100% 10.800 15.120 N TMEM39B n/a
3 TRCN0000242809 TTGGGCAAGGCCTACTCATAC pLKO_005 1666 3UTR 100% 10.800 15.120 N TMEM39B n/a
4 TRCN0000167450 GAACACACATTACTATGACAA pLKO.1 1073 3UTR 100% 4.950 6.930 N TMEM39B n/a
5 TRCN0000242807 ACAGCAAGAACGTCTACAAAG pLKO_005 1409 3UTR 100% 10.800 7.560 N TMEM39B n/a
6 TRCN0000242806 TGAAGAACACACATTACTATG pLKO_005 1069 3UTR 100% 10.800 7.560 N TMEM39B n/a
7 TRCN0000167888 CTTCAGCAACTACTATGCCTT pLKO.1 1617 3UTR 100% 2.640 1.848 N TMEM39B n/a
8 TRCN0000172550 GAAGCACAGCAAGAACGTCTA pLKO.1 1404 3UTR 100% 4.050 2.430 N TMEM39B n/a
9 TRCN0000124006 GCCTACTATGTGGCCTTTGTA pLKO.1 1035 3UTR 100% 5.625 3.938 N Tmem39b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002956975.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12160 pDONR223 100% 36.5% None 1_920del;1262_1364del;1726_1921del n/a
2 ccsbBroad304_12160 pLX_304 0% 36.5% V5 1_920del;1262_1364del;1726_1921del n/a
3 TRCN0000480932 GTTCCCGCACCGGTAAAGCACCGC pLX_317 62.4% 36.5% V5 1_920del;1262_1364del;1726_1921del n/a
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