Construct: ORF ccsbBroad304_12191

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013968.1_s304c1, BRDN0000402484
Derived from:
ccsbBroadEn_12191
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YY1AP1 (55249)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12191
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55249 YY1AP1 YY1 associated protein 1 NM_139121.2 94.2% 94.2% 1_117del
2 human 55249 YY1AP1 YY1 associated protein 1 NM_001198899.1 87.2% 87.2% 1_282del
3 human 55249 YY1AP1 YY1 associated protein 1 NM_001198900.1 87.2% 87.2% 1_282del
4 human 55249 YY1AP1 YY1 associated protein 1 NM_018253.3 87.2% 87.2% 1_282del
5 human 55249 YY1AP1 YY1 associated protein 1 NM_001198901.1 86% 86% 1_315del
6 human 55249 YY1AP1 YY1 associated protein 1 NM_001198902.1 86% 86% 1_315del
7 human 55249 YY1AP1 YY1 associated protein 1 NM_139119.2 86% 86% 1_315del
8 human 55249 YY1AP1 YY1 associated protein 1 NM_001198905.1 83.3% 83.3% 1_315del;728_729ins60
9 human 55249 YY1AP1 YY1 associated protein 1 NM_139118.2 76.5% 76.5% 1_513del;926_927ins60
10 human 55249 YY1AP1 YY1 associated protein 1 NM_001198903.1 72.6% 72.6% 1_729del
11 human 55249 YY1AP1 YY1 associated protein 1 NM_001198904.1 70.3% 70.3% 1_729del;1142_1143ins60
12 human 54856 GON4L gon-4 like NM_001282861.2 40.8% 39.6% (many diffs)
13 human 54856 GON4L gon-4 like NM_032292.6 40.8% 39.6% (many diffs)
14 human 54856 GON4L gon-4 like XM_005245286.3 33.4% 32.3% (many diffs)
15 human 54856 GON4L gon-4 like XM_005245284.3 30.2% 29.3% (many diffs)
16 human 54856 GON4L gon-4 like XM_011509659.2 30.2% 29.3% (many diffs)
17 human 55249 YY1AP1 YY1 associated protein 1 NM_001198906.2 29.9% 27.7% 1_513del;1193_1212del;1272_1273ins1196
18 human 54856 GON4L gon-4 like NM_001282858.2 27.9% 27% (many diffs)
19 human 54856 GON4L gon-4 like XM_006711393.3 27.9% 27% (many diffs)
20 human 54856 GON4L gon-4 like XM_006711394.4 27.9% 27% (many diffs)
21 human 54856 GON4L gon-4 like NM_001282856.1 27.8% 27% (many diffs)
22 human 54856 GON4L gon-4 like NM_001282860.1 27.8% 27% (many diffs)
23 human 54856 GON4L gon-4 like XM_011509658.2 27.6% 25.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2001
ORF length:
1935
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca gcagcatgtt cagctcttga cacaaatcca ccttcttgcc acctgcaacc
121ccaatctcaa tccggaggcc agtagcacca ggatatgtct taaagagctg ggaacctttg
181ctcaaagctc catcgccctt caccatcagt acaaccccaa gtttcagacc ctgttccaac
241cctgtaactt gatgggagct atgcagctga ttgaagactt cagcacacat gtcagcattg
301actgcagccc tcataaaact gtcaagaaga ctgccaatga atttccctgt ttgccaaagc
361aagtggcttg gatcctggcc acaagcaagg ttttcatgta tccagagtta cttccagtgt
421gttccctgaa ggcaaagaat ccccaggata agatcctctt caccaaggct gaggacaatt
481tgttagcttt aggactgaag cattttgaag ggactgagtt tcttaaccct ctaatcagca
541agtaccttct aacctgcaag actgcccgcc aactgacagt gagaatcaag aacctcaaca
601tgaacagagc tcctgacaac atcattaaat tttataagaa gaccaaacag ctgccagtcc
661taggaaaatg ctgtgaagag atccagccac atcagtggaa gccacctata gagagagaag
721aacaccggct cccattctgg ttaaaggcca gtctgccatc catccaggaa gaactgcggc
781acatggctga tggtgctaga gaggtaggaa atatgactgg aaccactgag atcaactcag
841atcaaggcct agaaaaagac aactcagagt tggggagtga aactcggtac ccactgctat
901tgcctaaggg tgtagtcctg aaactgaagc cagttgccga ccgtttcccc aagaaggctt
961ggagacagaa gcgttcatca gtcctgaaac ccctccttat ccaacccagc ccctctctcc
1021agcccagctt caaccctggg aaaacaccag cccaatcaac tcattcagaa gcccctccga
1081gcaaaatggt gctccggatt cctcacccaa tacagccagc cactgtttta cagacagttc
1141caggtgtccc tccactgggg gtcagtggag gtgagagttt tgagtctcct gcagcactgc
1201ctgctatgcc ccctgaggcc aggacaagct tccctctgtc tgagtcccag actttgctct
1261cttctgcccc tgtgcccaag gtaatgatgc cctcccctgc ctcttccatg tttcgaaagc
1321catatgtgag acggagaccc tcaaaaagaa ggggagccag ggcctttcgc tgtatcaaac
1381ctgcccctgt tatccaccct gcatctgtta tcttcactgt tcctgctacc actgtgaaga
1441ttgtgagcct tggcggtggc tgtaacatga tccagcctgt caatgcggct gtggcccaga
1501gtccccagac tattcccatc gccaccctct tggttaaccc tacttccttc ccctgtccat
1561tgaaccagcc ccttgtggcc tcctctgtct cacccttaat tgtttctggc aattctgtga
1621atcttcctat accatccacc cctgaagata aggcccacat gaatgtggac attgcttgtg
1681ctgtggctga tggggaaaat gcctttcagg gcctagaacc caaattagag ccccaggaac
1741tatctcctct ctctgctact gttttcccca aagtggaaca tagcccaggg cctccaccag
1801tcgataaaca gtgccaagaa ggattgtcag agaacagtgc ctatcgctgg accgttgtga
1861aaacagagga gggaaggcaa gctctggagc cgctccctca gggcatccag gagtctctaa
1921acaactcttc ccctggggat ttagaggaag ttgtcaagat ggaacctgaa gatgctacag
1981aggaaatcag tggatttctt tgcccaactt tcttgtacaa agtggttggt aagcctatcc
2041ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
2101ttaagtcgac aatcaacctc tggatta

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