Transcript: Human NM_139121.2

Homo sapiens YY1 associated protein 1 (YY1AP1), transcript variant 5, mRNA.

Source:
NCBI, updated 2018-12-23
Taxon:
Homo sapiens (human)
Gene:
YY1AP1 (55249)
Length:
2705
CDS:
419..2473

Additional Resources:

NCBI RefSeq record:
NM_139121.2
NBCI Gene record:
YY1AP1 (55249)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_139121.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000275070 ACTACTGGCCAACCTACTAAA pLKO_005 355 5UTR 100% 13.200 10.560 N YY1AP1 n/a
2 TRCN0000134024 CAGATAGCGAAGGAACTATTT pLKO.1 386 5UTR 100% 13.200 10.560 N YY1AP1 n/a
3 TRCN0000275071 CAGATAGCGAAGGAACTATTT pLKO_005 386 5UTR 100% 13.200 10.560 N YY1AP1 n/a
4 TRCN0000275069 CTGAGCCTCAAGCTAACTTTA pLKO_005 150 5UTR 100% 13.200 9.240 N YY1AP1 n/a
5 TRCN0000275072 AGAATAAGAGTCTGGAGACTG pLKO_005 2480 3UTR 100% 4.050 2.835 N YY1AP1 n/a
6 TRCN0000135460 GTTGTCAAGATGGAACCTGAA pLKO.1 2420 CDS 100% 4.050 2.430 N YY1AP1 n/a
7 TRCN0000134438 GCTCCTGACAACATCATTAAA pLKO.1 1079 CDS 100% 15.000 7.500 Y YY1AP1 n/a
8 TRCN0000285285 GCTCCTGACAACATCATTAAA pLKO_005 1079 CDS 100% 15.000 7.500 Y YY1AP1 n/a
9 TRCN0000133702 GCATCTGTTATCTTCACTGTT pLKO.1 1871 CDS 100% 4.950 2.475 Y YY1AP1 n/a
10 TRCN0000133891 CCCTTAATTGTTTCTGGCAAT pLKO.1 2063 CDS 100% 4.050 2.025 Y YY1AP1 n/a
11 TRCN0000135041 CTGAGGACAATTTGTTAGCTT pLKO.1 939 CDS 100% 3.000 1.500 Y YY1AP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_139121.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15890 pDONR223 0% 100% 100% None n/a
2 ccsbBroad304_15890 pLX_304 0% 100% 100% V5 n/a
3 ccsbBroadEn_12191 pDONR223 100% 94.2% 94.2% None 1_117del n/a
4 ccsbBroad304_12191 pLX_304 0% 94.2% 94.2% V5 1_117del n/a
5 TRCN0000478823 TTCCAAAATGACCAGCCAAATCGT pLX_317 19.9% 94.2% 94.2% V5 1_117del n/a
6 ccsbBroadEn_08497 pDONR223 100% 92.5% 92.4% None 0_1ins165;1322C>T n/a
7 ccsbBroad304_08497 pLX_304 0% 92.5% 92.4% V5 0_1ins165;1322C>T n/a
8 TRCN0000470020 ACATCCTCTCAAAATGCTGCGGTC pLX_317 17.4% 92.5% 92.4% V5 0_1ins165;1322C>T n/a
9 ccsbBroadEn_03562 pDONR223 100% 91.2% 91.2% None 0_1ins198 n/a
10 ccsbBroad304_03562 pLX_304 0% 91.2% 91.2% V5 0_1ins198 n/a
11 TRCN0000480671 CTGAAGATAAAAGGAGGGATAAAT pLX_317 17.9% 91.2% 91.2% V5 0_1ins198 n/a
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