Construct: ORF ccsbBroad304_12244

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011882.1_s304c1, BRDN0000403728
Derived from:
ccsbBroadEn_12244
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
URGCP (55665)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12244
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55665 URGCP upregulator of cell prolife... NM_001077664.2 96.2% 96.2% (many diffs)
2 human 55665 URGCP upregulator of cell prolife... NM_001290075.1 96.2% 96.2% (many diffs)
3 human 55665 URGCP upregulator of cell prolife... NM_001290076.1 96.2% 96.2% (many diffs)
4 human 55665 URGCP upregulator of cell prolife... NM_017920.4 92.7% 92.7% (many diffs)
5 human 55665 URGCP upregulator of cell prolife... NM_001077663.2 91.8% 91.8% (many diffs)
6 mouse 72046 Urgcp upregulator of cell prolife... XM_011243756.2 82.8% 86.2% (many diffs)
7 mouse 72046 Urgcp upregulator of cell prolife... XM_011243757.2 82.8% 86.2% (many diffs)
8 mouse 72046 Urgcp upregulator of cell prolife... NM_001077661.1 79.9% 83.1% (many diffs)
9 mouse 72046 Urgcp upregulator of cell prolife... XM_006514814.3 79.9% 83.1% (many diffs)
10 mouse 72046 Urgcp upregulator of cell prolife... XM_006514815.3 79.9% 83.1% (many diffs)
11 mouse 72046 Urgcp upregulator of cell prolife... XM_011243755.2 79.9% 83.1% (many diffs)
12 mouse 72046 Urgcp upregulator of cell prolife... XM_011243754.2 79.1% 82.2% (many diffs)
13 mouse 72046 Urgcp upregulator of cell prolife... XM_011243753.2 78.7% 81.9% (many diffs)
14 mouse 72046 Urgcp upregulator of cell prolife... NM_178623.3 76.2% 79.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2634
ORF length:
2568
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gtcacttttg ggcctagaga cgtaccaggt ccagaaactc agcctccagg
121actctctgca gatcagtttt gacagtatga agaactgggc ccctcaggtt cccaaagact
181tgccctggaa tttcctcagg aagttgcagg ccctcaatgc tgatgccagg aataccacta
241tggtgctgga cgtgctccca gacgccaggc ctgtggagaa ggagagccag atggaagagg
301agatcatcta ctgggaccca gctgatgacc ttgctgccga catttattcc ttttctgagc
361tgcccacccc tgatacgcca gtgaacccct tagaccttct ctgtgccctg ctgctctcct
421cagacagttt cctgcaacaa gaaatagcgt tgaaaatggc cctctgccag tttgcactcc
481cactcgtgtt gcctgactcg gagaaccact accatacatt tctgctgtgg gccatgcggg
541gcattgtgag gacatggtgg tcccagcccc caaggggcat ggggagcttc cgggaagaca
601gcgtggtctt gtccagggcg cccgccttcg ccttcgtgcg catggacgtc agtagcaact
661ccaagtccca gcttctcaac gccgtcctca gcccgggcca caggcagtgg gactgcttct
721ggcatcggga cctcaacttg ggcaccaatg cccgggagat ttcggatggg ttggtagaaa
781tttcctggtt ttttcccagc ggaagggagg acttggacat tttcccagaa cctgtggcct
841ttctgaacct gagaggtgac atcgggtctc actggctgca gtttaagctc ttgacagaaa
901tctcctccgc tgtgtttata ttgactgaca atatcagtaa gaaggaatac aaattgctgt
961actccatgaa ggagtcaacc acaaaatact acttcatcct gagtccctac cgtgggaagc
1021gcaacacaaa cctgagattt ctgaataagt taattcctgt gctgaaaata gaccactcac
1081atgtcctggt aaaggtcagc agcactgaca gcgacagctt cgtgaagagg atccgggcca
1141tcgttgggaa tgtgctgcgg gcaccctgca ggcgggtatc tgtggaggac atggcgcacg
1201cagcccgcaa actgggccta aaggtcgacg aggactgtga ggagtgtcag aaagcgaaag
1261accggatgga gaggattacc aggaaaatca aagactcgga tgcctacaga agggacgagc
1321tgaggctgca gggggacccc tggagaaagg cagcccaagt ggagaaggag ttctgccagc
1381tccagtgggc cgtggacccc cctgagaagc acagggctga gctgaggcgg cggctgctag
1441aacttcgaat gcagcagaac ggccatgatc cctcctcggg ggtgcaggag ttcatctcgg
1501ggatcagcag cccctccttg agtgagaagc agtacttcct gaggtggatg gagtggggcc
1561tggcacgggt ggcccagccg cgactgagac agcctccgga gacgcttctc accctgagac
1621caaagcacgg gggcaccaca gacgtggggg agccgctctg gcctgagccc ctaggggtgg
1681aacacttctt gcgggagatg ggacagtttt atgaggctga gagctgtctt gtggaggcag
1741ggaggctgcc ggcaggccag aggcgttttg cccacttccc aggcttggcc tcggagctgc
1801tgctgacagg gctgcctctg gagctaatcg atgggagcac gctgagcatg cccgtccgct
1861gggtcacagg gctcctgaag gagctgcatg tccgactgga gagacggtca aggctggtgg
1921ttctgtcaac cgtcggggtg ccaggcacgg gcaagtccac actcctcaac accatgtttg
1981ggctgcggtt tgccacaggg aagagctgcg gtcctcgagg ggccttcatg cagctcatca
2041cagtggctga gggcttcagc caggacctgg gctgtgacca catcctggtg atagactccg
2101ggggcttgat aggtggggcc ttgacgtcag ctggggacag atttgagctg gaggcttcct
2161tggccactct gctcctggga ctgagcaatg tcaccgtgat cagtctagct gaaaccaagg
2221acattccagc agctattctg catgcatttc tgaggttaga aaaaacgggg cacatgccca
2281actaccagtt tgtataccag aaccttcatg atgtatctgt tcccggccct aggcccagag
2341acaagagaca gctcctggat ccacctggtg acctgagcag ggctgcagcc cagatggaga
2401aacagggcga cggcttccgg gcactggcag gcctggcctt ctgcgaccct gagaagcagc
2461acatctggca catcccaggc ctgtggcacg gagcacctcc catggccgca gtgagcttgg
2521cctacagtga agccatattt gaattgaaga gatgcctact cgaaaacatc aggaacggct
2581tgtcgaacca aaacaaaaac atccagcagc tcattgagct ggtgagacgg ctgtgcccaa
2641ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
2701cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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