Construct: ORF ccsbBroad304_12319
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013739.1_s304c1, BRDN0000398742
- Derived from:
- ccsbBroadEn_12319
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PARP6 (56965)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12319
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_017022418.2 | 22.9% | 22.9% | 1_1098del |
| 2 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_011521805.2 | 21.9% | 21.9% | 1_1161del |
| 3 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323519.2 | 17.8% | 17.8% | 1_1503del |
| 4 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323521.2 | 17.8% | 17.8% | 1_1503del |
| 5 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323523.2 | 17.8% | 17.8% | 1_1503del |
| 6 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323524.2 | 17.8% | 17.8% | 1_1503del |
| 7 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323526.2 | 17.8% | 17.8% | 1_1503del |
| 8 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_024449998.1 | 17.8% | 17.8% | 1_1503del |
| 9 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323515.2 | 17.8% | 17.8% | 1_1506del |
| 10 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323516.2 | 17.8% | 17.8% | 1_1506del |
| 11 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323530.2 | 17.8% | 17.8% | 1_1506del |
| 12 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_024449997.1 | 17.8% | 17.8% | 1_1506del |
| 13 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323522.2 | 17.3% | 17.3% | 1_1563del |
| 14 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323532.2 | 17.3% | 17.3% | 1_1563del |
| 15 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_020214.4 | 17.3% | 17.3% | 1_1563del |
| 16 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_024449996.1 | 17.3% | 17.3% | 1_1563del |
| 17 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323525.2 | 17.2% | 17.2% | 1_1566del |
| 18 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323528.2 | 17.2% | 17.2% | 1_1566del |
| 19 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323531.2 | 17.2% | 17.2% | 1_1566del |
| 20 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_024449995.1 | 17.2% | 17.2% | 1_1566del |
| 21 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957664.1 | 13.4% | 1_1824del;2152_2428del | |
| 22 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957663.1 | 13% | 1_1905del;2233_2509del | |
| 23 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136603.2 | 12.8% | 1_1938del;2266_2542del | |
| 24 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136605.2 | 12.8% | 1_1944del;2272_2548del | |
| 25 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136599.2 | 12.8% | 1_1947del;2275_2551del | |
| 26 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957662.1 | 12.7% | 1_1965del;2293_2569del | |
| 27 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136608.2 | 12.5% | 1_2004del;2332_2608del | |
| 28 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136609.2 | 12.5% | 1_2004del;2332_2608del | |
| 29 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957661.1 | 12.4% | 1_2015del;2343_2619del | |
| 30 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_001751361.2 | 12.4% | 1_2018del;2346_2622del | |
| 31 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_001751362.2 | 12.3% | 1_2035del;2363_2639del | |
| 32 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136611.2 | 12.3% | 1_2054del;2382_2658del | |
| 33 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957660.1 | 12.2% | 1_2075del;2403_2679del | |
| 34 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957659.1 | 12.1% | 1_2078del;2406_2682del | |
| 35 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136607.2 | 12% | 1_2114del;2442_2718del | |
| 36 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136610.2 | 12% | 1_2117del;2445_2721del | |
| 37 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136606.2 | 11.8% | 1_2166del;2494_2770del | |
| 38 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136594.2 | 11.5% | 1_2235del;2563_2839del | |
| 39 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136604.2 | 11.4% | 1_2245del;2573_2849del | |
| 40 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136596.2 | 11.4% | 1_2257del;2585_2861del | |
| 41 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_001751363.1 | 8% | 1_1939del;2122_2123ins144 | |
| 42 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957665.1 | 7.9% | 1_1975del;2158_2159ins144 | |
| 43 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_006511380.3 | 20.8% | 21.4% | (many diffs) |
| 44 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313534.1 | 18.6% | 19.1% | (many diffs) |
| 45 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242801.1 | 17.6% | 18.1% | (many diffs) |
| 46 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | NM_029922.3 | 17.3% | 17.8% | (many diffs) |
| 47 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313533.1 | 17.3% | 17.8% | (many diffs) |
| 48 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242800.1 | 17.2% | 17.8% | (many diffs) |
| 49 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313532.1 | 17.2% | 17.8% | (many diffs) |
| 50 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242799.1 | 16.9% | 17.5% | (many diffs) |
| 51 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313531.1 | 16.9% | 17.5% | (many diffs) |
| 52 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | NM_001205239.1 | 16.7% | 17.3% | (many diffs) |
| 53 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313530.1 | 16.7% | 17.3% | (many diffs) |
| 54 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242798.1 | 16.7% | 17.2% | (many diffs) |
| 55 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313529.1 | 16.7% | 17.2% | (many diffs) |
| 56 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242797.1 | 16.4% | 17% | (many diffs) |
| 57 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313528.1 | 16.4% | 17% | (many diffs) |
| 58 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_006511375.2 | 16.4% | 16.9% | (many diffs) |
| 59 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242795.1 | 16.4% | 16.9% | (many diffs) |
| 60 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242796.1 | 16.4% | 16.9% | (many diffs) |
| 61 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313527.1 | 16.4% | 16.9% | (many diffs) |
| 62 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_870764.1 | 12.3% | (many diffs) | |
| 63 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | NR_038075.1 | 12.3% | (many diffs) | |
| 64 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | NR_038074.1 | 12.2% | (many diffs) | |
| 65 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_001778990.1 | 12.1% | (many diffs) | |
| 66 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_001778988.1 | 12% | (many diffs) | |
| 67 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_870763.1 | 12% | (many diffs) | |
| 68 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_001778989.1 | 11.8% | (many diffs) | |
| 69 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_001778987.1 | 11.8% | (many diffs) | |
| 70 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_870762.1 | 11.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 393
- ORF length:
- 327
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg aaaaggacag cacaggatgc cctccaagga tgagctggtc cagagataca 121 acaggatgaa taccatcccc cagacccgat ccattcagtc acggttcctg cagagtcgga 181 atctaaactg tatagcactt tgtgaagtga ttacatctaa ggacctccag aagcatggga 241 acatctgggt gtgccctgtg tccgaccatg tctgcacaag attcttcttt gtatatgagg 301 atggtcaggt gggcgatgcc aacattaata ctcaggaccc caagatacag aaggaaatca 361 tgcgtgtgat cggaactcag gtttacacaa actgcccaac tttcttgtac aaagtggttg 421 gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta 481 accggtggcg cgttaagtcg acaatcaacc tctggatta