Construct: ORF ccsbBroad304_12471
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003064.1_s304c1, BRDN0000407903
- Derived from:
- ccsbBroadEn_12471
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DCLRE1C (64421)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12471
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519620.3 | 88.3% | 88.7% | (many diffs) |
2 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519621.2 | 71.2% | 70.5% | (many diffs) |
3 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001350965.2 | 66.7% | 64% | (many diffs) |
4 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XR_930515.2 | 63.8% | (many diffs) | |
5 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001033855.3 | 59.3% | 56.8% | (many diffs) |
6 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XR_001747187.1 | 50.2% | (many diffs) | |
7 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001350966.2 | 48.2% | 44.4% | (many diffs) |
8 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_024448135.1 | 48.2% | 44.4% | (many diffs) |
9 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001350967.2 | 47.4% | 44.5% | (many diffs) |
10 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XR_001747185.2 | 46.7% | (many diffs) | |
11 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001289076.2 | 42.8% | 39.4% | (many diffs) |
12 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001289078.2 | 42.8% | 39.4% | (many diffs) |
13 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_022487.4 | 42.8% | 39.4% | (many diffs) |
14 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_006717491.4 | 42.8% | 39.4% | (many diffs) |
15 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519616.1 | 42.8% | 39.4% | (many diffs) |
16 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519617.1 | 42.8% | 39.4% | (many diffs) |
17 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_017016557.1 | 42.8% | 39.4% | (many diffs) |
18 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001033857.3 | 42.1% | 39.5% | (many diffs) |
19 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001033858.3 | 42.1% | 39.5% | (many diffs) |
20 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001289077.2 | 42.1% | 39.5% | (many diffs) |
21 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001289079.2 | 42.1% | 39.5% | (many diffs) |
22 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519619.1 | 42.1% | 39.5% | (many diffs) |
23 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_017016558.1 | 42.1% | 39.5% | (many diffs) |
24 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_024448134.1 | 42.1% | 39.5% | (many diffs) |
25 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NR_146960.1 | 31.3% | (many diffs) | |
26 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NR_110297.2 | 19.7% | (many diffs) | |
27 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NR_146962.1 | 19.4% | (many diffs) | |
28 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NR_146961.2 | 19.3% | (many diffs) | |
29 | mouse | 227525 | Dclre1c | DNA cross-link repair 1C | XM_006497462.2 | 65.9% | 67.9% | (many diffs) |
30 | mouse | 227525 | Dclre1c | DNA cross-link repair 1C | NM_001302684.1 | 59.8% | 58.8% | (many diffs) |
31 | mouse | 227525 | Dclre1c | DNA cross-link repair 1C | XM_006497454.3 | 58% | 57.1% | (many diffs) |
32 | mouse | 227525 | Dclre1c | DNA cross-link repair 1C | XM_006497453.3 | 57.9% | 57% | (many diffs) |
33 | mouse | 227525 | Dclre1c | DNA cross-link repair 1C | NM_175683.4 | 56.9% | 56% | (many diffs) |
34 | mouse | 227525 | Dclre1c | DNA cross-link repair 1C | NM_146114.3 | 48.9% | 48.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1368
- ORF length:
- 1302
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgag ttctttcgag gggcagatgg ccgagtatcc aactatctcc atagaccgct 121 tcgataggga gaacctgagg gcccgcgcct acttcctgtc ccactgccac aaagatcaca 181 tgaaaggatt aagagcccct accttgaaaa gaaggttgga gtgcagcttg aaggtttatc 241 tatactgttc acctgtgact aaggagttgt tgttaacgag cccgaaatac agattttgga 301 agaaacgaat tatatctatt gaaatcgaga ctcctaccca gatatcttta gtggatgaag 361 catcaggaga gaaggaagag attgttgtga ctctcttacc agctggtcac tgtccgggat 421 cagttatgtt tttatttcag ggcaataatg gaactgtcct gtacacagga gacttcagat 481 tggcgcaagg agaagctgct agaatggagc ttctgcactc cgggggcaga gtcaaagaca 541 tccaaagtgt atatttggat actacgttct gtgatccaag attttaccaa attccaagtc 601 gggaggagtg tttaagtgga gtcttagagc tggtccgaag ctggatcact cggagcccgt 661 accatgttgt gtggctgaac tgcaaagcgg cttatggcta tgaatatttg ttcaccaacc 721 ttagtgaaga attaggagtc caggttcatg tgaataagct agacatgttt aggaacatgc 781 ctgagatcct tcgtcatctc acaacagacc gcaacactca gatccatgca tgccggcatc 841 ccaaggcaga ggaatatttt cagtggagca aattaccctg tggaattact tccagaaata 901 gaattccact ccacataatc agcattaagc catccaccat gtggtttgga gaaaggagca 961 gaaaaacaaa tgtaattgtg aggactggag agagttcata cagagcttgt ttttcttttc 1021 actcctccta cagtgagatt aaagatttct tgagctacct ctgtcctgtg aacgcatatc 1081 caaatgtcat tccagttggc acaactatgg ataaagttgt cgaaatctta aagcctttat 1141 gccggtcttc ccaaagtacg gagccaaagt ataaaccact gggaaaactg aagagagcta 1201 gaacagttca ccgagactca gggtctcact ctgtcactca ggctagaatg cggtggtgcc 1261 atcatgactc cctgtatcct ttaactcctg ggatcaagcg atcttcctgc ctcagcctcc 1321 tgactagctg gatcacaggt gcataccgcc atgcccagct aatgatttac ccaactttct 1381 tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt 1441 aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta