Transcript: Mouse NM_001302684.1

Mus musculus DNA cross-link repair 1C (Dclre1c), transcript variant 5, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Dclre1c (227525)
Length:
3363
CDS:
88..1809

Additional Resources:

NCBI RefSeq record:
NM_001302684.1
NBCI Gene record:
Dclre1c (227525)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001302684.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000175129 CCTTTCGATGTTGCAATACAA pLKO.1 1909 3UTR 100% 5.625 7.875 N Dclre1c n/a
2 TRCN0000175024 GCTAACTTCATAGACTGTGAA pLKO.1 1420 CDS 100% 4.950 3.960 N Dclre1c n/a
3 TRCN0000193680 CAAAGTACAAACCGCTTGGAA pLKO.1 1187 CDS 100% 3.000 2.400 N Dclre1c n/a
4 TRCN0000193442 GCTTATGGCTACGAGTATTTA pLKO.1 712 CDS 100% 15.000 10.500 N Dclre1c n/a
5 TRCN0000175933 GAGTATCCAACCATCTCCATT pLKO.1 115 CDS 100% 4.950 3.465 N Dclre1c n/a
6 TRCN0000173672 CCCTGTGGTATAACTTCCCAA pLKO.1 898 CDS 100% 2.640 1.848 N Dclre1c n/a
7 TRCN0000193184 CAACAACAACAACAACAGAAA pLKO.1 1855 3UTR 100% 4.950 2.475 Y Dclre1c n/a
8 TRCN0000174943 GCACACATACATACATACATA pLKO.1 3050 3UTR 100% 5.625 2.813 Y Lrrn4cl n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001302684.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12471 pDONR223 100% 59.8% 58.8% None (many diffs) n/a
2 ccsbBroad304_12471 pLX_304 0% 59.8% 58.8% V5 (many diffs) n/a
3 TRCN0000465585 AGAATCAACACGATTGCACTCCGA pLX_317 32.6% 59.8% 58.8% V5 (many diffs) n/a
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