Construct: ORF ccsbBroad304_12592

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015288.1_s304c1, BRDN0000400968
Derived from:
ccsbBroadEn_12592
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VTCN1 (79679)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12592
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79679 VTCN1 V-set domain containing T c... NM_001253849.1 100% 100%
2 human 79679 VTCN1 V-set domain containing T c... NM_001253850.1 82.3% 71.8% (many diffs)
3 human 79679 VTCN1 V-set domain containing T c... NM_024626.4 66.3% 66.3% 1_285del
4 human 79679 VTCN1 V-set domain containing T c... XM_017002335.2 65.1% 65.1% 1_300del
5 human 79679 VTCN1 V-set domain containing T c... XM_011542143.2 56.3% 56.3% 1_435del
6 human 79679 VTCN1 V-set domain containing T c... NR_045603.2 20.8% 1_447del;1009_2695del
7 human 79679 VTCN1 V-set domain containing T c... NR_045604.2 13.6% 1_357del;431_432ins206;713_2399del
8 mouse 242122 Vtcn1 V-set domain containing T c... NM_178594.3 56.3% 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
627
ORF length:
561
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt cagaggccgg acagcagtgt ttgctgatca agtgatagtt ggcaatgcct
121ctttgcggct gaaaaacgtg caactcacag atgctggcac ctacaaatgt tatatcatca
181cttctaaagg caaggggaat gctaaccttg agtataaaac tggagccttc agcatgccgg
241aagtgaatgt ggactataat gccagctcag agaccttgcg gtgtgaggct ccccgatggt
301tcccccagcc cacagtggtc tgggcatccc aagttgacca gggagccaac ttctcggaag
361tctccaatac cagctttgag ctgaactctg agaatgtgac catgaaggtt gtgtctgtgc
421tctacaatgt tacgatcaac aacacatact cctgtatgat tgaaaatgac attgccaaag
481caacagggga tatcaaagtg acagaatcgg agatcaaaag gcggagtcac ctacagctgc
541taaactcaaa ggcttctctg tgtgtctctt ctttctttgc catcagctgg gcacttctgc
601ctctcagccc ttacctgatg ctaaaatacc caactttctt gtacaaagtg gttggtaagc
661ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
721ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)