Construct: ORF ccsbBroad304_12632

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013463.1_s304c1, BRDN0000400788
Derived from:
ccsbBroadEn_12632
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MFSD13A (79847)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12632
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79847 MFSD13A major facilitator superfami... XM_024448173.1 99.8% 99.5% 653T>C
2 human 79847 MFSD13A major facilitator superfami... XM_011540167.2 67.1% 66.9% 1_360del;1013T>C
3 human 79847 MFSD13A major facilitator superfami... XM_024448171.1 67.1% 66.9% 1_360del;1013T>C
4 human 79847 MFSD13A major facilitator superfami... NM_024789.4 47.5% 47.3% 1_813del;1466T>C
5 human 79847 MFSD13A major facilitator superfami... XM_006717973.3 47.5% 47.3% 1_813del;1466T>C
6 human 79847 MFSD13A major facilitator superfami... XM_006717974.3 47.5% 47.3% 1_813del;1466T>C
7 human 79847 MFSD13A major facilitator superfami... XM_011540160.2 47.5% 47.3% 1_813del;1466T>C
8 human 79847 MFSD13A major facilitator superfami... XM_011540163.2 47.5% 47.3% 1_813del;1466T>C
9 human 79847 MFSD13A major facilitator superfami... XM_017016654.1 47.5% 47.3% 1_813del;1466T>C
10 human 79847 MFSD13A major facilitator superfami... XM_017016655.1 47.5% 47.3% 1_813del;1466T>C
11 human 79847 MFSD13A major facilitator superfami... XM_017016656.1 47.5% 47.3% 1_813del;1466T>C
12 human 79847 MFSD13A major facilitator superfami... XM_011540169.3 47.4% 43.4% (many diffs)
13 human 79847 MFSD13A major facilitator superfami... XM_017016657.1 33.5% 30.9% (many diffs)
14 human 79847 MFSD13A major facilitator superfami... XM_017016658.2 33.5% 30.9% (many diffs)
15 mouse 75146 Mfsd13a major facilitator superfami... NM_029186.2 41.9% 43.3% (many diffs)
16 mouse 75146 Mfsd13a major facilitator superfami... XR_386522.1 21.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
804
ORF length:
738
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga cctggtgcag gtcttccact gccacttcaa cagcaacttc ttccctctct
121tcctggagca tctgttgtcc gaccatatct ccctttccac gggctccatc ctgttgggcc
181tctcctatgt cgctccccat ctcaacaacc tctacttcct gtccctgtgc cggcgctggg
241gcgtctacgc ggtggtgcgg gggctcttcc tgctcaagct gggacttagc ctgctcatgt
301tgttggccgg cccggaccac ctcagcctgc tgtgcctctt cattgccagc aaccgcgtct
361tcactgaggg cacctgtaag ctgctgacct tggtggtcac tgacctggta gacgaggacc
421tggtgctgaa ccaccgcaag caggcagcct cggcactcct ctttggcatg gttgccttgg
481tgaccaagcc aggccagacc tttgccccgc tgctgggcac ctggctgctc tgtttctaca
541caggtcatga cctcttccag cagtccctca taacccctgt ggggagtgcc catccctggc
601cagagccccc agctccagcc cctgcacagg ccccgacgct ccgccagggc tgcttctacc
661tgctggtgct ggtgcccatc acctgtgctc tgctgcagct cttcacctgg tcccagtcca
721cgctgcatgg gagacgcctg cacatggtca aggcccagcg ccagaacctg tcacaggccc
781aaaccctgga tgttaagatg gtgtgcccaa ctttcttgta caaagtggtt ggtaagccta
841tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
901gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)