Construct: ORF ccsbBroad304_12681

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012962.1_s304c1, BRDN0000405763
Derived from:
ccsbBroadEn_12681
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHD9 (80205)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12681
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80205 CHD9 chromodomain helicase DNA b... XR_001751994.2 4.2% 1_687del;1045_8380del
2 human 80205 CHD9 chromodomain helicase DNA b... NM_001352127.2 4.1% .8% 1_241del;599_8643del
3 human 80205 CHD9 chromodomain helicase DNA b... NM_025134.6 4.1% .8% 1_241del;599_8643del
4 human 80205 CHD9 chromodomain helicase DNA b... XM_017023723.2 4.1% .8% 1_241del;599_8643del
5 human 80205 CHD9 chromodomain helicase DNA b... XM_017023722.2 4.1% .8% 1_241del;599_8646del
6 human 80205 CHD9 chromodomain helicase DNA b... NM_001308319.1 4.1% .8% 1_241del;599_8691del
7 human 80205 CHD9 chromodomain helicase DNA b... XM_017023721.1 4.1% .8% 1_241del;599_8691del
8 human 80205 CHD9 chromodomain helicase DNA b... XM_005256168.4 4.1% .8% 1_241del;599_8694del
9 human 80205 CHD9 chromodomain helicase DNA b... XM_005256169.2 4.1% .8% 1_241del;599_8694del
10 human 80205 CHD9 chromodomain helicase DNA b... XM_006721281.2 4.1% .8% 1_241del;599_8694del
11 human 80205 CHD9 chromodomain helicase DNA b... XM_006721283.3 4.1% .8% 1_241del;599_8694del
12 human 80205 CHD9 chromodomain helicase DNA b... XM_011523347.2 4.1% .8% 1_241del;599_8694del
13 human 80205 CHD9 chromodomain helicase DNA b... XM_017023718.2 4.1% .8% 1_241del;599_8694del
14 human 80205 CHD9 chromodomain helicase DNA b... XM_017023719.1 4.1% .8% 1_241del;599_8694del
15 human 80205 CHD9 chromodomain helicase DNA b... XM_017023720.1 4.1% .8% 1_241del;599_8694del
16 human 80205 CHD9 chromodomain helicase DNA b... XM_024450459.1 4.1% .8% 1_241del;599_8694del
17 human 80205 CHD9 chromodomain helicase DNA b... XR_001751993.1 4% 1_687del;1045_8732del
18 human 80205 CHD9 chromodomain helicase DNA b... XR_001751995.2 3% 1_688del;1046_11755del
19 mouse 109151 Chd9 chromodomain helicase DNA b... XM_017312520.1 3.6% .8% (many diffs)
20 mouse 109151 Chd9 chromodomain helicase DNA b... NM_177224.2 3.6% .8% (many diffs)
21 mouse 109151 Chd9 chromodomain helicase DNA b... XM_017312519.1 3.6% .8% (many diffs)
22 mouse 109151 Chd9 chromodomain helicase DNA b... XM_006530570.3 3.6% .8% (many diffs)
23 mouse 109151 Chd9 chromodomain helicase DNA b... NM_001310530.1 3.6% .8% (many diffs)
24 mouse 109151 Chd9 chromodomain helicase DNA b... XM_006530569.2 3.6% .8% (many diffs)
25 mouse 109151 Chd9 chromodomain helicase DNA b... XM_011248272.2 3.6% .8% (many diffs)
26 mouse 109151 Chd9 chromodomain helicase DNA b... XM_011248273.2 3.6% .8% (many diffs)
27 mouse 109151 Chd9 chromodomain helicase DNA b... XM_011248274.2 3.6% .8% (many diffs)
28 mouse 109151 Chd9 chromodomain helicase DNA b... XM_011248275.2 3.6% .8% (many diffs)
29 mouse 109151 Chd9 chromodomain helicase DNA b... XM_017312517.1 3.6% .8% (many diffs)
30 mouse 109151 Chd9 chromodomain helicase DNA b... XM_017312518.1 3.6% .8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
423
ORF length:
357
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt aatcaatctt ttggtagccc agctgaacat gtgttatctc cacactctca
121gtttaattgt tctccaatcc atccccaaaa ccaacccaat ggtttgtttc cagatgtatc
181agatggcagt ccaatgtggg gccatcagac agctactacc atttcaaatc aaaatggatc
241tccttttcac caacaaggac attcacactc tatgcatcaa aataaaagct ttgtggcaca
301ccatgacttt gccttatttc aggccaatga acaacaaaca cagtgtactt cactacgctc
361acaacaaaac agaaataatc tcaacccagg gcagaattct cttagccagt ctaaaaattt
421tatgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
481tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
541tctggatta

Download FASTA (ORF) (Full)