Construct: ORF ccsbBroad304_12750
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009979.1_s304c1, BRDN0000402006
- Derived from:
- ccsbBroadEn_12750
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZMIZ2 (83637)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12750
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | NM_001300959.1 | 100% | 100% | |
| 2 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_005249873.2 | 97% | 97% | 897_974del |
| 3 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | NM_174929.2 | 96.4% | 96.4% | 163_258del |
| 4 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_005249872.2 | 96.4% | 96.4% | 163_258del |
| 5 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_005249871.2 | 96% | 96% | 897_974del;1144_1170del |
| 6 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_005249870.2 | 95.4% | 95.4% | 163_258del;1162_1188del |
| 7 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | NM_031449.4 | 93.6% | 93.6% | 163_258del;993_1070del |
| 8 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_005249869.2 | 93.6% | 93.6% | 163_258del;993_1070del |
| 9 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_005249866.2 | 92.7% | 92.7% | 163_258del;993_1070del;1240_1266del |
| 10 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_005249867.5 | 92.7% | 92.7% | 163_258del;993_1070del;1240_1266del |
| 11 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_005249868.4 | 92.7% | 92.7% | 163_258del;993_1070del;1240_1266del |
| 12 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_017012674.1 | 92.7% | 92.7% | 163_258del;993_1070del;1240_1266del |
| 13 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XR_926950.1 | 85% | (many diffs) | |
| 14 | human | 83637 | ZMIZ2 | zinc finger MIZ-type contai... | XM_011515566.1 | 70.6% | 67% | (many diffs) |
| 15 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | XM_011243735.2 | 87.8% | 90.6% | (many diffs) |
| 16 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | XM_017314664.1 | 85.8% | 87.7% | (many diffs) |
| 17 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | NM_001005867.1 | 85.2% | 88% | (many diffs) |
| 18 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | XM_011243733.2 | 84.7% | 87.3% | (many diffs) |
| 19 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | XM_011243734.2 | 82.8% | 84.5% | (many diffs) |
| 20 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | NM_028601.3 | 82.3% | 85% | (many diffs) |
| 21 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | XM_006514748.2 | 82.3% | 85% | (many diffs) |
| 22 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | XM_006514750.3 | 82.3% | 85% | (many diffs) |
| 23 | mouse | 52915 | Zmiz2 | zinc finger, MIZ-type conta... | XM_011243732.1 | 82.3% | 85% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2655
- ORF length:
- 2586
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gaactccatg aaccccatga aacctgccct gccccctgcg ccacacggtg 121 atggttcatt cgcatatgag tctgtgcctt ggcaacaaag cgccactcag ccggctggat 181 cgctgtctgt ggtcactact gtgtggggag ttggcaacgc gacacagagc cagtgcctgg 241 gacagcaggc gtttgctgaa ggcggcgcca acaagggcta cgtgcagcaa ggcgtgtaca 301 gccgcggggg ctaccctggg gcccccggct tcaccaccgg gtatgcaggc ggcccggggg 361 gcctgggcct cccctcacat gctgcaagac cctccactga cttcacgcaa gcggcagctg 421 ctgcagctgt ggctgctgcg gcagccactg ccaccgccac agccacagcc accgtggctg 481 ctctccagga gaagcagagc caggagctga gccagtatgg agcgatgggg gccggacagt 541 cttttaacag ccagtttctg cagcatggag gtccccgggg gcctagtgtc cccgctggca 601 tgaaccctac tggcatagga ggggtaatgg gcccctctgg cctctccccc ttggctatga 661 accccacccg ggcagcagga atgacaccct tgtatgcagg gcagcgtctg ccccaacatg 721 ggtatcctgg gcctccccag gcccagccac tgccccgaca gggggtcaag agaacctact 781 ctgaggtgta tccagggcag cagtatctgc aaggaggcca gtatgcaccc agcaccgccc 841 agtttgcgcc cagccctggg cagccccctg ccccctcccc ttcctaccct gggcacaggc 901 tgcccctgca gcagggcatg acccagtccc tgtccgtgcc tggccccacg ggactgcatt 961 ataagcctac ccgttccatc ccgggctatc ccagttcccc actgccaggg aaccccacgc 1021 cacccatgac cccaagcagc agcgtccctt acatgtcacc aaaccaagag gtcaagtctc 1081 ccttcttgcc tgatctcaag cccaacctca actccttgca ctcatcgccc tctggaagcg 1141 ggccttgtga cgagttgcgg ctgaccttcc ctgtgcgcga tggggtggtc ctggagccct 1201 tccgcctgca gcacaacctg gctgtaagca accatgtctt ccagctgcga gactcagtct 1261 acaagaccct gataatgagg cctgacctgg agctgcaatt caagtgctac caccacgagg 1321 accggcagat gaacaccaac tggccagcct cggtgcaggt cagcgtcaat gccacgccgc 1381 tcaccatcga gcgtggcgac aacaagacct cgcacaagcc actctacctg aagcatgtgt 1441 gccagccagg ccgcaacacc atccagatca ccgtcaccgc ctgctgctgc tcccacctct 1501 tcgtgctgca gctagtgcac cgcccatccg tccgctcggt gctgcagggc ctcctcaaaa 1561 agcgcctcct gcctgctgag cactgcatca ccaagataaa gcggaacttc agcagcggca 1621 ccatccctgg cacccctggg cccaacggag aggacggggt ggagcagaca gctatcaagg 1681 tgtccctgaa gtgccccatc accttccgca ggatccagct ccctgcccga ggtcatgact 1741 gtcgccacat acagtgcttt gacctggagt cgtacctgca gctcaactgt gagcggggga 1801 cttggaggtg tcctgtgtgc aacaagacag ctttgctgga gggcctggag gtggaccagt 1861 acatgctggg catcctgatt tacattcaga actctgacta tgaggagatc accatcgacc 1921 ccacgtgcag ctggaagcca gtgcccgtga agcctgacat gcacatcaag gaggagccgg 1981 atgggccagc actgaagcgc tgccgcaccg tgagccccgc ccacgtgctc atgcccagcg 2041 tgatggagat gatcgccgcc ctgggccccg gcgctgcccc ctttgccccc ctgcagcccc 2101 cctcagtccc tgcccccagc gactaccctg gccagggttc cagcttcctg gggcctggaa 2161 ctttccctga gtccttccca cccaccacgc ccagcacccc aacccttgct gagttcaccc 2221 cgggaccacc ccccatctcc taccagtctg acattcccag cagcctcctg acttcagaga 2281 agtctaccgc ctgcctccca agccagatgg caccagcagg tcacctggac cccactcaca 2341 atcctgggac accaggacta cacacctcca accttggggc ccctccaggt ccccagctgc 2401 accattcaaa ccctccccca gcgtcccggc agtccttggg ccaagcgagc ttaggaccta 2461 cgggtgaact ggccttcagt cctgccacag gcgtgatggg gccccccagc atgtctggag 2521 ccggggaggc cccagaacca gctctggacc tgctcccgga actgaccaac cctgatgagc 2581 tactgtccta cttgggccca cccgacctcc ctacgaacaa caatgacgac ctgctttctc 2641 tgtttgagaa caacttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc 2701 ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt 2761 cgacaatcaa cctctggatt a