Construct: ORF ccsbBroad304_12897

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016111.1_s304c1, BRDN0000400280
Derived from:
ccsbBroadEn_12897
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DISP1 (84976)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12897
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84976 DISP1 dispatched RND transporter ... NM_001369594.1 35.5% 35.5% 1627_4572del
2 human 84976 DISP1 dispatched RND transporter ... NM_032890.5 35.5% 35.5% 1627_4572del
3 human 84976 DISP1 dispatched RND transporter ... XM_006711592.2 35.5% 35.5% 1627_4572del
4 human 84976 DISP1 dispatched RND transporter ... XM_011510072.2 35.5% 35.5% 1627_4572del
5 human 84976 DISP1 dispatched RND transporter ... XM_011510073.2 35.5% 35.5% 1627_4572del
6 human 84976 DISP1 dispatched RND transporter ... XM_011510074.2 35.5% 35.5% 1627_4572del
7 human 84976 DISP1 dispatched RND transporter ... XM_011510075.2 35.5% 35.5% 1627_4572del
8 human 84976 DISP1 dispatched RND transporter ... XM_011510077.2 35.5% 35.5% 1627_4572del
9 human 84976 DISP1 dispatched RND transporter ... XM_017002611.1 35.5% 35.5% 1627_4572del
10 human 84976 DISP1 dispatched RND transporter ... XM_006711594.3 22.8% 22.8% 0_1ins582;1045_3990del
11 human 84976 DISP1 dispatched RND transporter ... XM_017002612.1 22.8% 22.8% 0_1ins582;1045_3990del
12 human 84976 DISP1 dispatched RND transporter ... NM_001350630.2 18.8% 18.7% (many diffs)
13 mouse 68897 Disp1 dispatched RND transporter ... NM_001278218.1 30% 31.3% (many diffs)
14 mouse 68897 Disp1 dispatched RND transporter ... NM_001278219.1 30% 31.3% (many diffs)
15 mouse 68897 Disp1 dispatched RND transporter ... NM_001278220.1 30% 31.3% (many diffs)
16 mouse 68897 Disp1 dispatched RND transporter ... NM_026866.3 30% 31.3% (many diffs)
17 mouse 68897 Disp1 dispatched RND transporter ... XM_006535596.4 29.4% 30.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1692
ORF length:
1626
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tatgagcaat ggaaacaatg attttgtggt tctgagcaac agcagcatcg
121caaccagtgc tgctaacccg agtcccctca ccccctgtga tggagaccat gcagcccagc
181agctcacacc caaagaagca acaagaacaa aagtgagtcc aaatggatgc ctgcaactta
241atggcacggt caaatcatcc tttctgcctt tagacaacca aagaatgcct cagatgttac
301cccaatgctg ccatccttgc ccataccatc accctttgac tagccatagc agtcaccaag
361agtgccatcc cgaggctggc cctgcagcac cctctgcttt ggcctcgtgt tgcatgcagc
421cacactccga gtattctgca tctctttgtc caaatcattc acctgtgtat cagactacgt
481gctgtcttca gccctctcca tccttctgcc tgcatcatcc gtggcctgac cattttcagc
541atcagcctgt gcaacagcac atagccaaca taagaccatc cagacctttc aagttgccaa
601aaagttatgc agccctgata gccgactggc cggtggtggt cttgggcatg tgcaccatgt
661tcatcgtagt ctgtgccttg gttggagtat tagtgccaga gctccctgac ttctctgatc
721cattgctggg ttttgaacca agaggaacag caataggcca gagattggtc acatggaata
781atatggtgaa aaatacagga tacaaagcaa cattagcaaa ttatcccttt aaatatgcag
841atgaacaagc caaaagccat cgggatgata gatggtcaga tgatcattat gaaagagaga
901aaagagaagt tgactggaac ttccacaagg acagcttttt ctgcgacgtt ccaagtgacc
961gatattccag agtggtattt acttcatctg gaggggagac attatggaat ttacctgcaa
1021ttaaatcaat gtgcaatgta gataattcca ggatcagatc tcatccccag tttggtgatc
1081tctgccagag gaccactgct gcctcctgct gccccagctg gacactggga aactacatcg
1141ccattctgaa caatagatcg tcctgtcaga aaatagttga gcgagacgtt tctcatacct
1201tgaagctgct tcggacttgt gccaaacact accaaaatgg cactctgggg ccagactgct
1261gggacatggc agccagaaga aaggaccagc tcaagtgcac caatgtgcca cgcaaatgta
1321ccaagtacaa tgctgtgtac cagatcctcc attacttggt ggacaaagac tttatgaccc
1381caaagacggc tgactatgcc acgccagctt taaaatacag catgctcttc tctcccacag
1441agaaagggga gagcatgatg aacatttact tggacaactt tgaaaactgg aactcttctg
1501acggcgtgac taccatcacc gggattgagt ttggtatcaa acacagtttg tttcaggatt
1561atcttctaat ggatactgtg tatcctgcca tagccattgt gattgtcctt ttagttatgt
1621gtgtctacac caagtccatg tttatcactc tgatgacaat gtttgcaata atcagttctt
1681tgattgtttc ctacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1741tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1801caatcaacct ctggatta

Download FASTA (ORF) (Full)