Construct: ORF ccsbBroad304_12943

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017655.1_s304c1, BRDN0000461666
Derived from:
ccsbBroadEn_12943
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STARD13 (90627)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12943
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90627 STARD13 StAR related lipid transfer... NM_001243466.2 99.9% 100% 1134A>G
2 human 90627 STARD13 StAR related lipid transfer... NM_001243474.1 76.2% 76.1% (many diffs)
3 human 90627 STARD13 StAR related lipid transfer... NM_178007.3 62.1% 62% 1134A>G;2060T>A;2062_3315del
4 human 90627 STARD13 StAR related lipid transfer... NM_178006.4 59.7% 57.7% (many diffs)
5 human 90627 STARD13 StAR related lipid transfer... XM_017020834.2 59.1% 57.9% (many diffs)
6 human 90627 STARD13 StAR related lipid transfer... NM_001243476.3 59% 58% (many diffs)
7 human 90627 STARD13 StAR related lipid transfer... XM_011535299.3 59% 58% (many diffs)
8 human 90627 STARD13 StAR related lipid transfer... XM_017020835.2 59% 58% (many diffs)
9 human 90627 STARD13 StAR related lipid transfer... XM_024449429.1 59% 58% (many diffs)
10 human 90627 STARD13 StAR related lipid transfer... NM_052851.3 52.1% 52.1% (many diffs)
11 mouse 243362 Stard13 StAR-related lipid transfer... XM_006504921.2 43% 44% (many diffs)
12 mouse 243362 Stard13 StAR-related lipid transfer... XM_006504922.3 43% 44% (many diffs)
13 mouse 243362 Stard13 StAR-related lipid transfer... XM_006504923.3 43% 44% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2130
ORF length:
2061
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gctggaaccc tcctcagttc tccatgcaaa cgttaaccag gcccctttgt
121ggtgcttggt gctgcgctgg tgcagagaat gcaaagacac tgtctgtggt gggaaacaga
181aaagcagagt gaaccacaca ttccagcgcc gggaaattga ggcaaaagaa gcatgtgact
241ggctccgtgc tgccgggttc ccgcaatacg ctcagttata tgaggattca caatttccca
301tcaacattgt ggctgtcaag aatgatcatg attttcttga aaaggacctt gtagaacctc
361tttgcagacg actaaatacg ttgaacaagt gtgcctcaat gaaacttgat gtgaacttcc
421aaaggaaaaa gggtgacgac tccgatgagg aagatctttg tatcagcaac aaatggactt
481tccaaagaac cagtcgcagg tggtctcgtg tggacgacct ctacacgctg ctccctcgag
541gagacagaaa tgggtcaccg ggaggcacgg ggatgaggaa cacgaccagc agtgagagcg
601tcctcacaga cctgagcgag cctgaggtct gctccattca cagcgaaagc agtggaggca
661gcgacagtcg cagccagccg ggccagtgct gtacagacaa cccggtcatg ctggatgccc
721cactcgtcag cagcagcctc ccacagcccc ccagagatgt cctcaaccac cccttccacc
781ccaagaatga gaagcccacg agggctaggg ccaaatcatt tttgaaacgc atggaaacac
841tccgagggaa gggagcccac gggaggcata aggggtctgg gcggacaggt ggcctggtga
901tcagtgggcc catgttgcag caggagccag agtcctttaa ggctatgcag tgcatccaaa
961taccaaatgg agatctccag aattcgccgc cacctgcctg cagaaaaggg ctcccatgct
1021ctggcaagtc gagtggcgag agcagcccgt cggagcacag cagcagcggg gtgagcacgc
1081cctgcctgaa ggaacgcaag tgccacgagg ccaacaagcg cgggggcatg tacttggagg
1141acctagatgt gctggcgggg acagcactgc cggatgcagg ggaccaaagc cgtatgcatg
1201agtttcactc ccaagagaat ttggtggtgc atattcccaa ggatcacaaa ccaggaacat
1261tccccaaggc actttctatt gaaagcctct ctcccacaga tagtagcaat ggggttaatt
1321ggaggaccgg tagcatctcc ctgggcagag agcaggtccc tggtgccagg gagccccggc
1381tcatggcgtc ctgccacaga gccagccgag tcagtatcta tgacaatgtc cctggctccc
1441atctgtatgc cagcacagga gatcttttgg acttggagaa agatgacctt ttccctcact
1501tggatgacat tctgcagcat gtcaatgggc tccaagaggt agtcgatgac tggtccaaag
1561atgtcttgcc tgaactgcaa actcatgata cattggttgg ggaacctggc ttatccacct
1621ttccatctcc taatcagatc accttagatt ttgaaggtaa ctctgtctca gaaggtcgga
1681cgacacccag tgatgtggaa agagatgtaa catctcttaa tgaatctgag cctcctgggg
1741tcagagacag gagggattct ggtgtagggg cctctctgac caggccaaac aggcgactcc
1801gatggaacag tttccagctg tcgcaccagc cccggccggc cccagcatcg ccccacatca
1861gcagccagac ggccagccag ctgagcctgc tccagcgctt ctcactgctc cgcctcacgg
1921ccatcatgga gaagcactcc atgtccaaca agcacggctg gacatggtca gttccaaagt
1981tcatgaagag gatgaaagtt cccgactaca aagacaaggc tgtctttggc gttcctctca
2041tagtccacgt ccaaagaacg ggacagcccc tgcctcaaag tattcagcaa gcactgagat
2101atctacgcag caactgcctc gatcaggagt tgccaacttt cttgtacaaa gtggttggta
2161agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
2221ggtggcgcgt taagtcgaca atcaacctct ggatta

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