Construct: ORF ccsbBroad304_13009
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009320.1_s304c1, BRDN0000412089
- Derived from:
- ccsbBroadEn_13009
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D27P (96597)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13009
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 254272 | TBC1D28 | TBC1 domain family member 28 | NM_001039397.2 | 11.9% | 10.9% | (many diffs) |
| 2 | human | 353149 | TBC1D26 | TBC1 domain family member 26 | NM_178571.4 | 9.7% | 8.4% | (many diffs) |
| 3 | human | 254272 | TBC1D28 | TBC1 domain family member 28 | XM_011523781.2 | 8% | 7.4% | (many diffs) |
| 4 | human | 254272 | TBC1D28 | TBC1 domain family member 28 | XM_024450684.1 | 8% | 7.4% | (many diffs) |
| 5 | human | 96597 | TBC1D27P | TBC1 domain family member 2... | NR_147084.1 | 2.3% | 1_268del;350_3421del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 150
- ORF length:
- 81
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagatggat gagcacccgg atatcctgcc cacccagggg caaggcaaca 121 tcatcattac taagtatgag cagggacgct tgccaacttt cttgtacaaa gtggttggta 181 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 241 ggtggcgcgt taagtcgaca atcaacctct ggatta