Construct: ORF ccsbBroad304_13031

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004424.1_s304c1, BRDN0000460959
Derived from:
ccsbBroadEn_13031
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC2A13 (114134)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13031
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114134 SLC2A13 solute carrier family 2 mem... XM_011537850.3 74.7% 74.3% (many diffs)
2 human 114134 SLC2A13 solute carrier family 2 mem... XM_011537849.2 73.7% 73.3% (many diffs)
3 human 114134 SLC2A13 solute carrier family 2 mem... XM_011537847.2 54.9% 54.6% (many diffs)
4 human 114134 SLC2A13 solute carrier family 2 mem... XR_001748568.1 52.7% (many diffs)
5 human 114134 SLC2A13 solute carrier family 2 mem... NM_052885.4 51.4% 51% (many diffs)
6 human 114134 SLC2A13 solute carrier family 2 mem... XM_017018764.1 26% 25.5% (many diffs)
7 human 114134 SLC2A13 solute carrier family 2 mem... XM_017018765.1 26% 25.5% (many diffs)
8 human 114134 SLC2A13 solute carrier family 2 mem... XM_017018766.1 17.9% 17.4% (many diffs)
9 human 114134 SLC2A13 solute carrier family 2 mem... XR_001748567.2 13.7% (many diffs)
10 mouse 239606 Slc2a13 solute carrier family 2 (fa... NM_001033633.3 42.2% 43.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1080
ORF length:
1014
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg cgagcggcgc aggaagcagc cggagccgga cgcggcgagc gcggccgggg
121agtgcagcct cctggctgcc gccgaatcga gcaccagcct gcagagcgcg ggcgcgggcg
181gcggcggcgt cggggacctg gagcgcgcgg cgcggcggca gttccagcag gacgagaccc
241ccgccttcgt gtacgtggtg gccgtcttct ccgcgctggg cggcttcctg tttggctatg
301acaccggggt ggtgtcaggg gccatgctgc tgctcaagcg gcagctcagt ctggacgcgc
361tgtggcagga gctgctggtg tccagcacgg tgggggcggc tgccgtctcg gcgctggccg
421gaggcgccct caacggcgtc ttcggccgcc gcgctgccat cctcctggcc agtgccctct
481tcaccgccgg ctccgcggtg ctggctgcgg ccaacaacaa ggagacactg ctcgccggcc
541gcctggtcgt gggactcggc atcggcattg cttctatgac agtgccagtg tacattgcgg
601aggtctcacc acccaattta agaggccgat tagtcaccat taataccctc ttcatcacag
661gagggcagtt ctttgcaagt gttgttgatg gagccttcag ttatctccag aaggatggat
721ggaggtacat gttgggactt gcagcagttc cggcggttat acagtttttt ggctttctct
781ttttgcctga aagccctcga tggcttattc agaaaggaca gactcagaag gcccgtagaa
841ttttatctca gatgcgtggt aaccagacca ttgatgagga atatgatagc atcaaaaaca
901acattgaaga ggaggaaaaa gaggttggct cagctggacc tgtgatctgc agaatgctga
961gttatccccc aactcgccga gctttaattg tgggttgtgg cctacaaatg ttccagcagc
1021tctcaggcat taacaccatc atgtatgtat ttctttctgg ctttttactg aaaagattgt
1081gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
1141attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1201ggatta

Download FASTA (ORF) (Full)