Construct: ORF ccsbBroadEn_13031
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004424.1_s300c1, BRDN0000455987
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC2A13 (114134)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_011537850.3 | 74.7% | 74.3% | (many diffs) |
| 2 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_011537849.2 | 73.7% | 73.3% | (many diffs) |
| 3 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_011537847.2 | 54.9% | 54.6% | (many diffs) |
| 4 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XR_001748568.1 | 52.7% | (many diffs) | |
| 5 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | NM_052885.4 | 51.4% | 51% | (many diffs) |
| 6 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_017018764.1 | 26% | 25.5% | (many diffs) |
| 7 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_017018765.1 | 26% | 25.5% | (many diffs) |
| 8 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_017018766.1 | 17.9% | 17.4% | (many diffs) |
| 9 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XR_001748567.2 | 13.7% | (many diffs) | |
| 10 | mouse | 239606 | Slc2a13 | solute carrier family 2 (fa... | NM_001033633.3 | 42.2% | 43.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1080
- ORF length:
- 1014
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CGAGCGGCGC AGGAAGCAGC CGGAGCCGGA CGCGGCGAGC GCGGCCGGGG 121 AGTGCAGCCT CCTGGCTGCC GCCGAATCGA GCACCAGCCT GCAGAGCGCG GGCGCGGGCG 181 GCGGCGGCGT CGGGGACCTG GAGCGCGCGG CGCGGCGGCA GTTCCAGCAG GACGAGACCC 241 CCGCCTTCGT GTACGTGGTG GCCGTCTTCT CCGCGCTGGG CGGCTTCCTG TTTGGCTATG 301 ACACCGGGGT GGTGTCAGGG GCCATGCTGC TGCTCAAGCG GCAGCTCAGT CTGGACGCGC 361 TGTGGCAGGA GCTGCTGGTG TCCAGCACGG TGGGGGCGGC TGCCGTCTCG GCGCTGGCCG 421 GAGGCGCCCT CAACGGCGTC TTCGGCCGCC GCGCTGCCAT CCTCCTGGCC AGTGCCCTCT 481 TCACCGCCGG CTCCGCGGTG CTGGCTGCGG CCAACAACAA GGAGACACTG CTCGCCGGCC 541 GCCTGGTCGT GGGACTCGGC ATCGGCATTG CTTCTATGAC AGTGCCAGTG TACATTGCGG 601 AGGTCTCACC ACCCAATTTA AGAGGCCGAT TAGTCACCAT TAATACCCTC TTCATCACAG 661 GAGGGCAGTT CTTTGCAAGT GTTGTTGATG GAGCCTTCAG TTATCTCCAG AAGGATGGAT 721 GGAGGTACAT GTTGGGACTT GCAGCAGTTC CGGCGGTTAT ACAGTTTTTT GGCTTTCTCT 781 TTTTGCCTGA AAGCCCTCGA TGGCTTATTC AGAAAGGACA GACTCAGAAG GCCCGTAGAA 841 TTTTATCTCA GATGCGTGGT AACCAGACCA TTGATGAGGA ATATGATAGC ATCAAAAACA 901 ACATTGAAGA GGAGGAAAAA GAGGTTGGCT CAGCTGGACC TGTGATCTGC AGAATGCTGA 961 GTTATCCCCC AACTCGCCGA GCTTTAATTG TGGGTTGTGG CCTACAAATG TTCCAGCAGC 1021 TCTCAGGCAT TAACACCATC ATGTATGTAT TTCTTTCTGG CTTTTTACTG AAAAGATTGT 1081 GCCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca 1141 acgaac