Construct: ORF ccsbBroad304_13087
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011771.1_s304c1, BRDN0000401960
- Derived from:
- ccsbBroadEn_13087
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TDRD9 (122402)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13087
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_017020955.2 | 76.1% | 67.9% | (many diffs) |
| 2 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_011536401.3 | 76% | 75.7% | (many diffs) |
| 3 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_011536402.2 | 72.8% | 71.5% | (many diffs) |
| 4 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_011536398.3 | 65.2% | 64.9% | (many diffs) |
| 5 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_006720020.3 | 64.6% | 64.4% | (many diffs) |
| 6 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_005267309.4 | 64.5% | 59.4% | (many diffs) |
| 7 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_006720019.3 | 64.2% | 64% | (many diffs) |
| 8 | human | 122402 | TDRD9 | tudor domain containing 9 | NM_153046.3 | 63.4% | 63.1% | (many diffs) |
| 9 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_011536397.2 | 60.9% | 60.6% | (many diffs) |
| 10 | human | 122402 | TDRD9 | tudor domain containing 9 | XM_011536400.2 | 57.1% | 56.8% | (many diffs) |
| 11 | mouse | 74691 | Tdrd9 | tudor domain containing 9 | XM_006516321.3 | 57.7% | 60.8% | (many diffs) |
| 12 | mouse | 74691 | Tdrd9 | tudor domain containing 9 | XM_006516319.2 | 55.7% | 58.5% | (many diffs) |
| 13 | mouse | 74691 | Tdrd9 | tudor domain containing 9 | XM_006516317.3 | 54.5% | 57.3% | (many diffs) |
| 14 | mouse | 74691 | Tdrd9 | tudor domain containing 9 | NM_029056.1 | 52.8% | 55.4% | (many diffs) |
| 15 | mouse | 74691 | Tdrd9 | tudor domain containing 9 | XM_006516316.2 | 51.6% | 54.2% | (many diffs) |
| 16 | mouse | 74691 | Tdrd9 | tudor domain containing 9 | XM_006516322.1 | 47.7% | 50.4% | (many diffs) |
| 17 | mouse | 74691 | Tdrd9 | tudor domain containing 9 | XM_006516320.2 | 47% | 49.4% | (many diffs) |
| 18 | mouse | 74691 | Tdrd9 | tudor domain containing 9 | XM_017315218.1 | 34.8% | 35.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2700
- ORF length:
- 2631
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtcggctacc atcagctgta aagagtttgc agactacttt gctgttcctg 121 ttcaaaacaa gatgaatcct gcatatattt ttgaagtgga aggcaagccc cattcagttg 181 aagagtatta tcttaatgat ttggagcaca ttcatcatag caagctctct cctcatctcc 241 tggaggaacc ggtgataact aaggatatat atgaagttgc tgtctctctc attcagatgt 301 ttgatgactt ggatatgaag gagagtggga acaaggcttg gtcgggggcc cagtttgtgt 361 tggagcgaag cagtgtgttg gtgtttttgc caggtctggg tgaaataaat tatatgcatg 421 aacttctcac aagcctggtt cataaaaggt tgcaggtcta tccactccat tcaagtgtgg 481 ctttagaaga acagaataat gtctttttaa gtccagtccc tgggtacaga aagattattc 541 tgtccaccaa tattgcagag agttctgtca cagttccaga tgtcaaatat gttatagatt 601 tttgtttgac tagaactttg gtctgtgatg aagatacaaa ttatcagagt ctgcgattga 661 gttgggcctc taaaaccagc tgtaatcaga gaaaaggccg tgctggacga gtgtctagag 721 ggtactgtta ccggctggta cacaaggatt tctgggacaa ctccatccct gatcatgttg 781 ttcctgagat gttgcgttgt ccattaggaa gcacgatctt gaaagtgaaa ttacttgaca 841 tgggtgagcc gagagctctg ctggccactg ccctttcccc gcctggtctg agtgacattg 901 agcgcaccat ccttctacta aaggaggttg gagcacttgc agtgagtggg cagagagaag 961 atgaaaaccc ccatgatggt gaattgacct tcttaggaag agttttagcc caacttcctg 1021 taaatcagca acttggtaaa ctcatagtcc ttggacatgt atttggatgt ctagatgaat 1081 gtcttattat agcggcagct ctttctttga agaatttttt tgcaatgcct ttccggcagc 1141 atctcgatgg atataggaac aaagtgaatt tctctggcag tagcaagagt gactgtattg 1201 cacttgttga ggcatttaaa acatggaagg cttgcagaca gacaggggag ctgcggtacc 1261 cgaaggatga acttaattgg ggacggttaa attacattca aatcaagaga attagagagg 1321 tggctgaatt atatgaagaa ttgaagacta gaatctcaca gttcaacatg catgttgatt 1381 ctcggcgacc tgtcatggac caagagtata tatataagca gcgattcatc ctacaggttg 1441 tattggcagg tgctttctat ccaaattact ttacttttgg acagccggat gaggagatgg 1501 cggtgaggga gctggctggc aaggacccca agacaactgt cgtgttgaaa cacattcctc 1561 cctatggatt tctttactat aaacaactac agtctctctt tagacagtgt ggtcaagtca 1621 aatccattgt atttgatggt gcaaaagcct ttgtggaatt ctcacgaaat ccaacagaga 1681 gatttaaaac ccttcctgca gtatatatgg caattaagat gtctcaacta aaagtttcac 1741 ttgaactcag cgttcattct gcagaggaaa ttgaagggaa ggtgcaaggc atgaacgtct 1801 caaagctcag gaacacaagg gtgaatgtgg acttccagaa gcagacggta gatcctatgc 1861 aagtctcctt taacacatca gacaggtccc agacagttac agatctcctt ctaactattg 1921 atgtcacaga ggtggttgaa gtgggacact tttggggata caggattgat gaaaacaact 1981 cagagattct gaaaaagctt actgctgaaa tcaaccaact gacgctggtg cccttgccca 2041 ctcacccaca tccagacttg gtctgtctgg caccttttgc tgattttgat aaacaacgct 2101 actttagagc tcaagtcctt tatgtttctg gaaattctgc tgaggtattc tttgtagatt 2161 atggcaataa gtctcatgta gatctacatc ttttgatgga gattccctgt caatttcttg 2221 aacttccttt ccaggctttg gaatttaaga tttgcaaaat gagaccatca gcaaagtctc 2281 ttgtttgtgg caagcactgg agtgacgggg ccagccagtg gttcgcctct ctggtgagcg 2341 gctgcaccct ccttgtgaag gtcttctctg tggtgcacag cgtcctgcac gtggatgtgt 2401 accagtactc aggggtccag gatgccatca acataagaga cgtcctcatc cagcagggct 2461 atgccgagct cacggaggag tcctacgagt ccaagcaaag ccatgaagtt ctcaagggcc 2521 tcttttccaa gtcagtagaa aacatgacag atggctctgt gccctttccc atgaaagacg 2581 acgagaaata tcttatccgg attttgttag agagcttttc taccaataaa ctgggtactc 2641 caaactgtaa ggcagaactt cacgggcctt ttaaccctta tgaactaagt gccatagttt 2701 tgccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 2761 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 2821 ggatta