Construct: ORF ccsbBroad304_13160

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014571.1_s304c1, BRDN0000399825
Derived from:
ccsbBroadEn_13160
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZDHHC19 (131540)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13160
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 131540 ZDHHC19 zinc finger DHHC-type conta... NM_001039617.2 86.9% 85.1% (many diffs)
2 human 131540 ZDHHC19 zinc finger DHHC-type conta... XM_006713493.2 86.3% 84.4% (many diffs)
3 human 131540 ZDHHC19 zinc finger DHHC-type conta... XM_005269279.3 81.6% 81.2% (many diffs)
4 human 131540 ZDHHC19 zinc finger DHHC-type conta... XM_006713494.2 78.7% 76.6% (many diffs)
5 human 131540 ZDHHC19 zinc finger DHHC-type conta... XR_924100.1 67.8% 1_122del;812_983del;1068_1069ins72
6 human 131540 ZDHHC19 zinc finger DHHC-type conta... NR_135618.2 66.5% 1_85del;932_1271del
7 human 131540 ZDHHC19 zinc finger DHHC-type conta... XM_011512417.1 63.4% 57.9% (many diffs)
8 human 131540 ZDHHC19 zinc finger DHHC-type conta... XR_001740012.1 60.9% 1_122del;969_1389del
9 human 131540 ZDHHC19 zinc finger DHHC-type conta... XR_001740013.1 60.5% 1_122del;807_808insAGTGC;964_1384del
10 human 131540 ZDHHC19 zinc finger DHHC-type conta... XR_246038.2 59.5% (many diffs)
11 human 131540 ZDHHC19 zinc finger DHHC-type conta... XR_924098.1 58% 1_122del;896_964del;1038_1458del
12 human 131540 ZDHHC19 zinc finger DHHC-type conta... XR_001740011.1 57.6% (many diffs)
13 human 131540 ZDHHC19 zinc finger DHHC-type conta... NR_135617.2 54.6% (many diffs)
14 human 131540 ZDHHC19 zinc finger DHHC-type conta... XR_002959490.1 48.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
912
ORF length:
846
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac actcttaacg gatgccacgc cgctggtgaa ggagccccat cccctgcctc
121tggtcccacg tccctggttc ctccctagcc tctttgctgc cttcaatgtg gtgctgctgg
181tctttttcag tggcctcttc ttcgcattcc cttgcaggtg gctggctcag aacggggagt
241gggcctttcc tgttatcaca ggctccctct ttgtccttac cttcttcagt cttgtttcac
301tcaacttctc agaccctggc atcttacatc aaggctccgc tgagcagggc cccttgacgg
361tgcacgtggt gtgggtgaac cacggggcct tccgcctgca atggtgtcca aagtgctgct
421tccaccgccc gccccggact taccactgcc cctggtgcaa catctgtgtg gaggactttg
481accaccactg caagtgggtc aataactgca tcggtcaccg caacttccgc ttcttcatgc
541tgcttgtcct gtccctgtgc ctctactcgg gcgccatgct ggtcacctgt ctcatcttcc
601tggtgcgcac aacccacctg cccttctcca ccgacaaggc catcgccatc gtggtggccg
661tgtccgccgc gggcctcctg gtgccgctgt ccctcctgct gctgatccag gcactgtccg
721tgagctcggc cgaccgcacc tacaagggca agtgcagaca ccttcaggga tacaacccct
781tcgaccaggg ctgtgccagc aactggtatt taacaatttg tgcaccactg ggacccaagg
841ctgctgcatc ctggatgagg ctggcctcag cttcctgcag agctaagccc tgggccgtgt
901gcttcccaag ctgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
961tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1021caatcaacct ctggatta

Download FASTA (ORF) (Full)