Construct: ORF ccsbBroad304_13216
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012756.1_s304c1, BRDN0000403903
- Derived from:
- ccsbBroadEn_13216
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XRRA1 (143570)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13216
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 143570 | XRRA1 | X-ray radiation resistance ... | NM_001270380.2 | 99.8% | 99.6% | 7T>C;1122G>A;1157C>G |
| 2 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017224.2 | 98.5% | 98.3% | (many diffs) |
| 3 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017225.2 | 93.4% | 91.7% | (many diffs) |
| 4 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017222.2 | 91.7% | 91.5% | (many diffs) |
| 5 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544763.2 | 86.1% | 86% | (many diffs) |
| 6 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544762.1 | 83.7% | 80.6% | (many diffs) |
| 7 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544760.2 | 80.7% | 78.3% | (many diffs) |
| 8 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544757.1 | 80.3% | 77.3% | (many diffs) |
| 9 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017223.2 | 79.8% | 78.9% | (many diffs) |
| 10 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544764.1 | 79.4% | 75.2% | (many diffs) |
| 11 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544756.1 | 78.7% | 75.9% | (many diffs) |
| 12 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017221.1 | 78.4% | 74.3% | (many diffs) |
| 13 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544755.1 | 76% | 73.2% | (many diffs) |
| 14 | human | 143570 | XRRA1 | X-ray radiation resistance ... | NM_182969.3 | 75.3% | 72.7% | (many diffs) |
| 15 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_005273765.2 | 74.6% | 72% | (many diffs) |
| 16 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544758.1 | 69% | 65.8% | (many diffs) |
| 17 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544759.1 | 68.1% | 65.6% | (many diffs) |
| 18 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544761.1 | 66.1% | 63.6% | (many diffs) |
| 19 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017232.2 | 55.8% | 54.4% | (many diffs) |
| 20 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017228.2 | 53.1% | 53.1% | (many diffs) |
| 21 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017231.2 | 51.6% | 49.1% | (many diffs) |
| 22 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017229.2 | 49.5% | 47% | (many diffs) |
| 23 | human | 143570 | XRRA1 | X-ray radiation resistance ... | NM_001270381.2 | 48.5% | 46.2% | (many diffs) |
| 24 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544766.3 | 48.1% | 45.8% | (many diffs) |
| 25 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544767.1 | 48.1% | 45.8% | (many diffs) |
| 26 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544768.1 | 48.1% | 45.8% | (many diffs) |
| 27 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017230.2 | 46.2% | 39% | (many diffs) |
| 28 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_005273770.2 | 46% | 43.8% | (many diffs) |
| 29 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_011544765.1 | 46% | 43.8% | (many diffs) |
| 30 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017226.2 | 46% | 43.8% | (many diffs) |
| 31 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017227.1 | 46% | 43.8% | (many diffs) |
| 32 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017233.2 | 42.7% | 36.6% | (many diffs) |
| 33 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_017017234.1 | 42.7% | 36.6% | (many diffs) |
| 34 | human | 143570 | XRRA1 | X-ray radiation resistance ... | XM_024448354.1 | 42.7% | 36.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1860
- ORF length:
- 1794
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc cctctcagga atctacaagc tggatgatgg gaagccttac ctgaacaact 121 gcttcccagc cagaaatctg cttcgcgtgc cggaggaagg ccaaggacac tggttagtgg 181 ttcagaaagg taacctcaag aagaagccca agggtttggt tggagcacaa gctgaacgtc 241 gggaaagcct gaaggcgact tcttttgagt tcaaggggaa gaaagagtct cggcgggaaa 301 atcaggtgga ccttcctgga catatcctgg accaggcttt tctgctgaag caccactgtg 361 tgaggaagcc atcagatctg tgcaccatta atgccaagga aaatgacttc aagcattttc 421 attctgtgat ttatatcaat gcctcagaaa acctgctgcc tctagaggca tttcacacgt 481 ttccagccct aaaggaactg gatctcgcat ttaatggcat caaaactatc tacgtgaaat 541 atggagactt taagttatta gaattcttgg acctttcctt caacagcctg actgtggagg 601 ccatctgtga tttggggatt ctgccacacc tccgtgtcct gctcctcaca ggcaatggcc 661 ttacctccct gccgcccaat ttggccgtcg cagaacagga ggcatctgta acatcgctga 721 caagcaagag gtacatcctg aggttcccag cgctggagac actgatgctg gatgacaaca 781 gactctccaa ccccagttgc tttgccagcc tggctgggct caggagactg aagaagttaa 841 gcttggatga aaacaggatt atcaggatcc catacctaca gcaagttcag ctctatgacg 901 agtcagtaga ctggaatgga ggcaggggaa gtccccataa agagccccaa ttcatgctgc 961 agtccaagcc aaggatgctt gaggactcag atgagcaact ggattatact gtactgccca 1021 tgaaaaagga tgttgaccgg acaggggtcc ctccactgct gaagagcttc ctccaggagc 1081 gactgggaat ccacttaatt cgaaggaaga tagtaaagcc taagcatcat gttttgatgt 1141 ctcggaagga atcatggaag gtgaaaagcg aaatcccaaa ggtgccaaag cagcctctgg 1201 tgctccatca cccgcgcatg aggacaacca agtctccctc aaaggatatg ctagagccag 1261 aggcagagct ggctgaagat ctgcccacta ccaaaagcac ttctgtggag tcagagatgc 1321 ccactgagaa cctggaaggc cattccccgt cttgccggac cttcgtgcca ctgcctccca 1381 tctgctccaa ctccactgtg catagtgaag agaccctgtc ccacctgagt gacacaactg 1441 tccgcctcag cccagagcgc ccatcagatg aggactccaa gagcacagag tccatcttcc 1501 tgacccaggt gagtgaactg ccttcctccg tcatccataa ggatgattta gagttaaagg 1561 agaaagacca aaagaaacca ccaacggcac ccagagaggt gaaagggact cggaggaaac 1621 tcccaactgc cttccttccc agcaagtacc acggctatga agaactgctg acagccaagc 1681 ctgatccagc cttcattgag ccaaagggaa tccagaagaa tgcacaagcc ctgcaacaaa 1741 tgctgaagca cccactcctg tgccactcct ccaagcccaa gctggacact cttcagaaac 1801 cctatgttca caaagagaaa cgggtgctgt cctgcaccag tggacagaac ggcggctggt 1861 gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 1921 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 1981 ggatta