Construct: ORF ccsbBroad304_13224

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011865.1_s304c1, BRDN0000407737
Derived from:
ccsbBroadEn_13224
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GLT1D1 (144423)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13224
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 144423 GLT1D1 glycosyltransferase 1 domai... XM_017018859.1 55.6% 54.4% (many diffs)
2 human 144423 GLT1D1 glycosyltransferase 1 domai... NM_144669.3 49.6% 43.2% (many diffs)
3 human 144423 GLT1D1 glycosyltransferase 1 domai... NM_001366886.1 43.9% 32.4% 323_374del;509_1038del
4 human 144423 GLT1D1 glycosyltransferase 1 domai... NM_001366889.1 41.9% 30% 321_420del;557_1086del
5 human 144423 GLT1D1 glycosyltransferase 1 domai... XM_017018855.2 38.6% 27.7% 1_240del;561_660del;797_1179del
6 human 144423 GLT1D1 glycosyltransferase 1 domai... XR_001748588.1 34.4% 1_259del;580_679del;816_1322del
7 human 144423 GLT1D1 glycosyltransferase 1 domai... XR_001748591.1 34.3% (many diffs)
8 human 144423 GLT1D1 glycosyltransferase 1 domai... XR_001748590.1 32.3% (many diffs)
9 human 144423 GLT1D1 glycosyltransferase 1 domai... NM_001366887.1 28.9% 13% (many diffs)
10 human 144423 GLT1D1 glycosyltransferase 1 domai... NR_133646.2 15.3% 1_104del;561_2971del
11 human 144423 GLT1D1 glycosyltransferase 1 domai... XR_001748589.1 13.9% (many diffs)
12 human 144423 GLT1D1 glycosyltransferase 1 domai... XR_001748587.1 13.7% 1_259del;582_633del;768_3311del
13 human 144423 GLT1D1 glycosyltransferase 1 domai... XR_001748586.1 13.5% 1_259del;580_679del;816_3359del
14 human 144423 GLT1D1 glycosyltransferase 1 domai... NR_159493.1 13.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
522
ORF length:
456
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcg gctcctgttc ctggcggtgc tgcggccaca caccggcaac gcggtcacgg
121cccagcgcgt tcgggcccat ctagaggctg cagggcacgt gtgcgttttg aaggatgcct
181ttgactttga aagccgatct gagattgcaa acctcatctt ggctgagaac tgcgaggctg
241ccctggctct tcatctctat aggggaggca ggcttttgca aggccaccga atcccttttg
301gagtcatctt tggtggaact gatgtaaatg aagatgccaa ccaggcggaa aaaaacacag
361tcatgggcag agttcttgag gaagccagcc gcatgctaag ggtaaggtct atgtccagag
421tcaaggaatt gcaacaacac caaacgccgc ttttaactgg aatacctttc ttcaacgctc
481tgagattaac caaagtgctg ataatttgca catatttctt ctgcccaact ttcttgtaca
541aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
601ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)