Construct: ORF ccsbBroad304_13284

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010393.1_s304c1, BRDN0000405954
Derived from:
ccsbBroadEn_13284
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ROPN1B (152015)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13284
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152015 ROPN1B rhophilin associated tail p... XM_005247138.3 100% 100%
2 human 54763 ROPN1 rhophilin associated tail p... NM_001317775.1 96.6% 95% (many diffs)
3 human 152015 ROPN1B rhophilin associated tail p... NM_001012337.3 56.6% 56.6% 1_276del
4 human 152015 ROPN1B rhophilin associated tail p... NM_001308313.2 56.6% 56.6% 1_276del
5 human 152015 ROPN1B rhophilin associated tail p... XM_006713513.3 56.6% 56.6% 1_276del
6 human 54763 ROPN1 rhophilin associated tail p... NM_001317774.1 54.7% 53.7% (many diffs)
7 human 54763 ROPN1 rhophilin associated tail p... NM_017578.4 54.7% 53.7% (many diffs)
8 human 54763 ROPN1 rhophilin associated tail p... XM_011512933.2 54.7% 53.7% (many diffs)
9 human 54763 ROPN1 rhophilin associated tail p... XM_011512934.2 54.7% 53.7% (many diffs)
10 mouse 76378 Ropn1 ropporin, rhophilin associa... NM_030744.2 49.6% 51.8% (many diffs)
11 mouse 76378 Ropn1 ropporin, rhophilin associa... XM_006522698.3 49.6% 51.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
426
ORF length:
360
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtg gaaagtggtg aatctcccaa cagatctgtt taatagtgtg atgaatgtgg
121gtcgcttcac ggaggagatc gagtggctga agtttttagc ccttgcttgc agcgctctgg
181gagttactat taccaaaact ctcaagatag tgtgtgaggt cttatcatgt gaccacaatg
241gtgggttgcc ccgaatccca ttcagcacct tccagtttct ctacacgtat attgccgaag
301tggatgggga gatctgtgca tcacatgtca gcaggatgct aaactacatt gaacaggaag
361taattggtcc tgatggttta atcacggtga atgactttac ccaaaacccc agggtttggc
421tggagtaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
481gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
541acctctggat ta

Download FASTA (ORF) (Full)