Construct: ORF ccsbBroad304_13342

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004098.1_s304c1, BRDN0000408252
Derived from:
ccsbBroadEn_13342
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLEC4F (165530)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13342
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 165530 CLEC4F C-type lectin domain family... NM_001321308.2 100% 100%
2 human 165530 CLEC4F C-type lectin domain family... NM_001258027.2 98.1% 97.8% (many diffs)
3 human 165530 CLEC4F C-type lectin domain family... NM_173535.3 94.6% 94.4% (many diffs)
4 human 165530 CLEC4F C-type lectin domain family... XM_011532642.2 89.6% 89.1% (many diffs)
5 human 165530 CLEC4F C-type lectin domain family... XM_011532639.2 83.7% 83.7% 178_507del
6 human 165530 CLEC4F C-type lectin domain family... XM_011532638.2 83% 81.1% 178_507del;1989_1996delCTCCCTAG;2031_2032insTAACAGTA
7 human 165530 CLEC4F C-type lectin domain family... XM_011532643.1 82.2% 80.4% (many diffs)
8 human 165530 CLEC4F C-type lectin domain family... XM_011532640.2 82.1% 81.9% (many diffs)
9 human 165530 CLEC4F C-type lectin domain family... XM_011532635.2 79.8% 79.6% (many diffs)
10 human 165530 CLEC4F C-type lectin domain family... XM_011532637.2 79.8% 79.6% (many diffs)
11 human 165530 CLEC4F C-type lectin domain family... XM_017003519.1 79.8% 79.6% (many diffs)
12 human 165530 CLEC4F C-type lectin domain family... XM_011532641.2 69.4% 68.5% 178_507del;1717_1718ins152;1740_1741ins139
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1770
ORF length:
1701
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggacggtgag gcagtccgct tctgcacaga taaccagtgt gtctccctgc
121acccccaaga ggtggactct gtggcaatgg ctcctgcagc ccccaagata ccgaggctcg
181ttcaggctac cccggcattt atggctgtga ccttggtctt ctctcttgtg actctctttg
241tagtggttca acagcagaca agacctgttc cgaagcctgt gcaagccgta attctgggag
301acaacattac tgggcattta ccttttgaac ccaacaatca tcaccacttt ggcagggagg
361cagaaatgcg agagcttatc cagacattta aaggccacat ggagaattcc agtgcctggg
421tagtagaaat ccagatgttg aagtgcagag tggacaatgt caattcgcag ctccaggtgc
481tcggtgatca tctgggaaac accaatgctg acatccagat ggtaaaagga gttctaaagg
541atgccactac attgagtttg cagacacaga tgttaaggag ttccctggag ggaaccaatg
601ctgagatcca gaggctcaag gaagaccttg aaaaggcaga tgctttaact ttccagacgc
661tgaatttctt aaaaagcagt ttagaaaaca ccagcattga gctccacgtg ctaagcagag
721gcttagaaaa tgcaaactct gaaattcaga tgttgaatgc cagtttggaa acggcaaata
781cccaggctca gttagccaat agcagtttaa agaacgctaa tgctgagatc tatgttttga
841gaggccatct agatagtgtc aatgacttga ggacccagaa ccaggtttta agaaatagtt
901tggaaggagc caatgctgag atccagggac taaaggaaaa tttgcagaac acaaatgctt
961taaactccca gacccaggcc tttataaaaa gcagttttga caacactagt gctgagatcc
1021agttcttaag aggtcatttg gaaagagctg gtgatgaaat tcacgtgtta aaaagggatt
1081tgaaaatggt cacagcccag acccaaaaag caaatggccg tctggaccag acagatactc
1141agattcaggt attcaagtca gagatggaaa atgtgaatac cttaaatgcc cagattcagg
1201tcttaaatgg tcatatgaaa aatgccagca gagagataca gaccctaaaa caaggaatga
1261agaatgcttc agccttaact tcccagaccc agatgttaga cagcaatctg cagaaggcca
1321gtgccgagat ccagaggtta agaggggatc tagagaacac caaagctcta accatggaaa
1381tccagcagga gcagagtcgc ctgaagaccc tccatgtggt cattacttca caggaacagc
1441tacaaagaac ccaaagtcag cttctccaga tggtcctgca aggctggaag ttcaatggtg
1501gaagcttata ttatttttct agtgtcaaga agtcttggca tgaggctgag cagttctgcg
1561tgtcccaggg agcccatctg gcatctgtgg cctccaagga ggagcaggca tttctggtag
1621agttcacaag taaagtgtac tactggatcg gtctcactga caggggcaca gagggctcct
1681ggcgctggac agatgggaca ccattcaacg ccgcccagaa caaagcgagc cacagcacca
1741ggaagggatg ctgccttcat ctaacagtat tgccaacttt cttgtacaaa gtggttggta
1801agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
1861ggtggcgcgt taagtcgaca atcaacctct ggatta

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